Variant report

Variant	rs11867723
Chromosome Location	chr17:16973269-16973270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16961416..16963930-chr17:16973048..16975828,2	MCF-7	breast:
2	chr17:16966782..16968541-chr17:16972398..16974708,2	MCF-7	breast:
3	chr17:16973153..16975478-chr17:16980179..16983152,3	MCF-7	breast:
4	chr17:16971774..16974202-chr17:16976172..16978952,3	K562	blood:
5	chr17:16973117..16976449-chr17:16977265..16979682,3	MCF-7	breast:
6	chr17:16972185..16973700-chr17:16976776..16979129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225442	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11867273	1.00[EUR][1000 genomes]
rs11868052	1.00[EUR][1000 genomes]
rs11868102	1.00[EUR][1000 genomes]
rs11868191	1.00[EUR][1000 genomes]
rs11868392	1.00[EUR][1000 genomes]
rs11868908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11869415	1.00[EUR][1000 genomes]
rs11869423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11870335	1.00[EUR][1000 genomes]
rs11870441	1.00[EUR][1000 genomes]
rs11870488	1.00[EUR][1000 genomes]
rs11871120	1.00[EUR][1000 genomes]
rs57958042	1.00[EUR][1000 genomes]
rs61729732	1.00[EUR][1000 genomes]
rs6502556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207396	1.00[EUR][1000 genomes]
rs7209447	1.00[EUR][1000 genomes]
rs7211205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7213477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7216705	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7220492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7221151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225977	1.00[EUR][1000 genomes]
rs8064296	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8065260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8066280	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8068587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8070944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8078661	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8080972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16975200	Weak transcription	K562	blood
2	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
3	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr17:16960800-16976400	Weak transcription	Aorta	Aorta
9	chr17:16961600-16977200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr17:16964400-16973600	Weak transcription	HepG2	liver
11	chr17:16964400-16974200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:16965000-16975400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr17:16966200-16980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:16966400-16973400	Weak transcription	Fetal Brain Female	brain
15	chr17:16966400-16975000	Weak transcription	Brain Germinal Matrix	brain
16	chr17:16966800-16975600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr17:16967200-16974200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:16967200-16974200	Weak transcription	Dnd41	blood
19	chr17:16967400-16974200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr17:16967400-16974200	Weak transcription	Gastric	stomach
21	chr17:16967400-16974200	Weak transcription	Thymus	Thymus
22	chr17:16967400-16974400	Weak transcription	Placenta	Placenta
23	chr17:16967400-16974600	Weak transcription	Fetal Thymus	thymus
24	chr17:16967400-16975000	Weak transcription	Colonic Mucosa	Colon
25	chr17:16967400-16975400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr17:16967600-16973400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr17:16967600-16974200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:16967600-16974200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr17:16967600-16974200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr17:16967800-16974200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr17:16967800-16974200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:16968000-16973600	Weak transcription	Small Intestine	intestine
33	chr17:16968000-16974200	Weak transcription	Esophagus	oesophagus
34	chr17:16968000-16974200	Weak transcription	Fetal Stomach	stomach
35	chr17:16968000-16974200	Weak transcription	Right Atrium	heart
36	chr17:16968000-16974600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr17:16968000-16976600	Weak transcription	NHDF-Ad	bronchial
38	chr17:16968000-16977000	Weak transcription	Colon Smooth Muscle	Colon
39	chr17:16968200-16974000	Weak transcription	Liver	Liver
40	chr17:16968200-16974200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr17:16968200-16974200	Weak transcription	Spleen	Spleen
42	chr17:16968200-16974600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr17:16968200-16975200	Weak transcription	Fetal Heart	heart
44	chr17:16968400-16974200	Weak transcription	Brain Angular Gyrus	brain
45	chr17:16968400-16974400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr17:16968800-16974200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr17:16969400-16974800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr17:16969600-16974200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr17:16970000-16981000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr17:16970400-16974000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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