Variant report

Variant	rs11869415
Chromosome Location	chr17:17032508-17032509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17030511..17032760-chr17:17032782..17034676,2	MCF-7	breast:
2	chr17:17028360..17030286-chr17:17031836..17034332,2	MCF-7	breast:
3	chr17:17026085..17028374-chr17:17031939..17033619,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11867273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11867522	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11867723	1.00[EUR][1000 genomes]
rs11868052	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11868102	1.00[EUR][1000 genomes]
rs11868191	1.00[EUR][1000 genomes]
rs11868392	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11868908	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11869283	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11869423	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11870335	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11870441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11870488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11871120	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57958042	1.00[EUR][1000 genomes]
rs61729732	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502556	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6502558	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6502559	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6502560	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7207396	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7209447	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7211205	1.00[EUR][1000 genomes]
rs7213477	1.00[EUR][1000 genomes]
rs7215338	1.00[EUR][1000 genomes]
rs7215588	1.00[EUR][1000 genomes]
rs7216705	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7220492	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7221151	1.00[EUR][1000 genomes]
rs7223773	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7225532	1.00[EUR][1000 genomes]
rs7225977	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8064296	1.00[EUR][1000 genomes]
rs8065260	1.00[EUR][1000 genomes]
rs8066280	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8067672	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8067959	1.00[EUR][1000 genomes]
rs8068587	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8070944	1.00[EUR][1000 genomes]
rs8073346	1.00[CEU][hapmap]
rs8075194	1.00[CEU][hapmap]
rs8078661	1.00[EUR][1000 genomes]
rs8080972	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9890700	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv984510	chr17:17015688-17048858	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524958	chr17:17029718-17060805	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17006200-17033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr17:17012000-17035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr17:17015400-17035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:17023200-17034200	Weak transcription	NH-A	brain
5	chr17:17024200-17043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:17024400-17032800	Weak transcription	HUVEC	blood vessel
7	chr17:17024400-17039800	Weak transcription	Small Intestine	intestine
8	chr17:17024600-17036000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr17:17024600-17045600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr17:17024800-17034200	Weak transcription	Fetal Kidney	kidney
11	chr17:17026400-17034200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr17:17027200-17032600	Enhancers	Psoas Muscle	Psoas
13	chr17:17027400-17042400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:17027400-17043000	Strong transcription	NHEK	skin
15	chr17:17027400-17043400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr17:17027600-17033400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:17028000-17038200	Genic enhancers	Fetal Muscle Trunk	muscle
18	chr17:17028200-17036600	Genic enhancers	Fetal Muscle Leg	muscle
19	chr17:17028800-17034400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr17:17029000-17035000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr17:17029200-17034400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr17:17029400-17035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:17029600-17033800	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr17:17029600-17034200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr17:17029800-17032800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr17:17029800-17035400	Genic enhancers	Right Ventricle	heart
27	chr17:17029800-17043400	Strong transcription	NHLF	lung
28	chr17:17029800-17044200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr17:17029800-17088400	Strong transcription	Dnd41	blood
30	chr17:17030000-17032800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr17:17030000-17041800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr17:17030000-17042800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr17:17030000-17042800	Strong transcription	A549	lung
34	chr17:17030000-17043200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr17:17030000-17043200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr17:17030000-17043600	Strong transcription	Esophagus	oesophagus
37	chr17:17030000-17048200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr17:17030000-17052200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr17:17030000-17088000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr17:17030200-17033000	Strong transcription	Liver	Liver
41	chr17:17030200-17034000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr17:17030200-17034400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr17:17030200-17034600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr17:17030200-17034600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr17:17030200-17035200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:17030200-17035600	Strong transcription	Aorta	Aorta
47	chr17:17030200-17037000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:17030200-17037400	Strong transcription	Colon Smooth Muscle	Colon
49	chr17:17030200-17037400	Strong transcription	Rectal Smooth Muscle	rectum
50	chr17:17030200-17037800	Strong transcription	Primary monocytes fromperipheralblood	blood

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