Variant report

Variant	rs8078661
Chromosome Location	chr17:17003318-17003319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17001973..17004582-chr17:17006426..17009352,2	MCF-7	breast:
2	chr17:17000263..17003828-chr17:17006059..17008926,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11867273	1.00[EUR][1000 genomes]
rs11867522	1.00[CEU][hapmap]
rs11867723	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11868052	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11868102	1.00[EUR][1000 genomes]
rs11868191	1.00[EUR][1000 genomes]
rs11868392	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11868908	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11869283	1.00[CEU][hapmap]
rs11869415	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11869423	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11870335	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11870441	1.00[EUR][1000 genomes]
rs11870488	1.00[EUR][1000 genomes]
rs11871120	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57958042	1.00[EUR][1000 genomes]
rs61729732	1.00[EUR][1000 genomes]
rs6502556	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502558	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502559	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502560	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207396	1.00[EUR][1000 genomes]
rs7209447	1.00[EUR][1000 genomes]
rs7211205	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7213477	1.00[EUR][1000 genomes]
rs7215338	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215588	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7216176	0.89[YRI][hapmap]
rs7216705	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7220492	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7221151	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223773	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225532	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225977	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8064296	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8065260	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8066280	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067672	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067959	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8068587	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8070944	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8073346	1.00[CEU][hapmap]
rs8075194	1.00[CEU][hapmap]
rs8076952	0.90[YRI][hapmap]
rs8080972	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9890700	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
2	chr17:16992400-17010000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:16993200-17003800	Genic enhancers	Fetal Intestine Small	intestine
4	chr17:16993400-17011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:16994600-17003400	Enhancers	Ovary	ovary
6	chr17:16994600-17011600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:16996400-17006200	Weak transcription	Liver	Liver
8	chr17:16997000-17016600	Enhancers	Left Ventricle	heart
9	chr17:16997200-17005000	Weak transcription	K562	blood
10	chr17:16997400-17006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:16997400-17010000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr17:16998000-17003600	Genic enhancers	Fetal Stomach	stomach
13	chr17:16998200-17016200	Enhancers	Fetal Heart	heart
14	chr17:16998600-17003800	Enhancers	Right Atrium	heart
15	chr17:16998600-17004000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr17:16998600-17006800	Enhancers	Psoas Muscle	Psoas
17	chr17:16998600-17015400	Genic enhancers	Fetal Muscle Leg	muscle
18	chr17:16998600-17016600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr17:16999000-17012800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr17:16999200-17006400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr17:16999600-17003600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr17:16999600-17005000	Weak transcription	Gastric	stomach
23	chr17:16999600-17008200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr17:17000200-17005600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr17:17000200-17012600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr17:17000200-17018200	Weak transcription	NH-A	brain
27	chr17:17000400-17003400	Weak transcription	Spleen	Spleen
28	chr17:17000400-17004000	Enhancers	Fetal Lung	lung
29	chr17:17000400-17005000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr17:17000600-17004000	Weak transcription	Primary T cells from cord blood	blood
31	chr17:17000600-17008000	Strong transcription	NHEK	skin
32	chr17:17000600-17009800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:17000600-17009800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr17:17001200-17003400	Enhancers	Fetal Brain Male	brain
35	chr17:17001200-17004200	Weak transcription	Fetal Thymus	thymus
36	chr17:17001400-17007000	Weak transcription	Primary B cells from cord blood	blood
37	chr17:17001600-17003800	Genic enhancers	Fetal Intestine Large	intestine
38	chr17:17001600-17005600	Enhancers	Right Ventricle	heart
39	chr17:17001600-17010200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr17:17001600-17010800	Weak transcription	Aorta	Aorta
41	chr17:17001600-17011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr17:17001800-17004400	Enhancers	Placenta	Placenta
43	chr17:17001800-17005600	Enhancers	Adipose Nuclei	Adipose
44	chr17:17001800-17006600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr17:17001800-17009200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr17:17001800-17009800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr17:17001800-17012800	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr17:17002000-17003600	Weak transcription	Thymus	Thymus
49	chr17:17002000-17005600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr17:17002000-17005800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links