Variant report

Variant	rs8080972
Chromosome Location	chr17:16961429-16961430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16945357..16947606-chr17:16959220..16962216,2	K562	blood:
2	chr17:16960541..16963488-chr17:16973669..16975731,3	MCF-7	breast:
3	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
4	chr17:16961416..16963930-chr17:16973048..16975828,2	MCF-7	breast:
5	chr17:16959720..16962081-chr17:16964608..16966842,2	K562	blood:
6	chr17:16944990..16949876-chr17:16959315..16962454,4	MCF-7	breast:
7	chr17:16958422..16961495-chr17:16962516..16966035,3	MCF-7	breast:
8	chr17:16953800..16956981-chr17:16958258..16961708,4	MCF-7	breast:
9	chr17:16955891..16957915-chr17:16961428..16963448,2	K562	blood:
10	chr17:16958465..16960222-chr17:16960878..16963338,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11867273	1.00[EUR][1000 genomes]
rs11867723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11868052	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11868102	1.00[EUR][1000 genomes]
rs11868191	1.00[EUR][1000 genomes]
rs11868392	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11868908	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11869283	1.00[CEU][hapmap]
rs11869415	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11869423	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11870335	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11870441	1.00[EUR][1000 genomes]
rs11870488	1.00[EUR][1000 genomes]
rs11871120	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57958042	1.00[EUR][1000 genomes]
rs61729732	1.00[EUR][1000 genomes]
rs6502556	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502558	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502559	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502560	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207396	1.00[EUR][1000 genomes]
rs7209447	1.00[EUR][1000 genomes]
rs7211205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7213477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215338	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7216705	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7220492	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7221151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223773	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225532	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225977	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8064296	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8065260	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8066280	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067672	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067959	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8068587	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8070944	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8073346	1.00[CEU][hapmap]
rs8078661	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
2	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:16949000-16975200	Weak transcription	K562	blood
4	chr17:16950200-16962600	Weak transcription	Dnd41	blood
5	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
6	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
7	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
8	chr17:16953800-16961800	Genic enhancers	A549	lung
9	chr17:16954200-16962200	Genic enhancers	Fetal Stomach	stomach
10	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr17:16955400-16970200	Weak transcription	NH-A	brain
12	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:16956600-16965600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr17:16956600-16966200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr17:16956800-16966000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr17:16957000-16962400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:16957200-16962800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:16957200-16964800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr17:16957200-16965800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr17:16957400-16963200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr17:16957400-16965000	Weak transcription	Primary B cells from cord blood	blood
23	chr17:16957600-16962200	Enhancers	Colon Smooth Muscle	Colon
24	chr17:16957600-16964000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:16957800-16963800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr17:16958800-16961600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:16958800-16965200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr17:16959200-16964600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr17:16959200-16965400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr17:16959200-16966800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:16959400-16972800	Weak transcription	HUVEC	blood vessel
33	chr17:16959600-16963800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr17:16959600-16966800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:16959600-16966800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr17:16959800-16963200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr17:16959800-16964400	Strong transcription	Fetal Intestine Small	intestine
40	chr17:16959800-16966400	Weak transcription	Small Intestine	intestine
41	chr17:16960000-16962800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr17:16960000-16963000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr17:16960000-16963000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr17:16960200-16961600	Strong transcription	Primary hematopoietic stem cells	blood
45	chr17:16960200-16961800	Genic enhancers	Brain Anterior Caudate	brain
46	chr17:16960200-16962600	Strong transcription	Brain Germinal Matrix	brain
47	chr17:16960200-16963200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr17:16960200-16963800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr17:16960200-16964400	Strong transcription	Fetal Intestine Large	intestine
50	chr17:16960200-16965000	Strong transcription	Primary T cells fromperipheralblood	blood

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