Variant report

Variant	rs57958042
Chromosome Location	chr17:16906073-16906074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16904092..16907044-chr17:16930901..16933093,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11867273	1.00[EUR][1000 genomes]
rs11867723	1.00[EUR][1000 genomes]
rs11868052	1.00[EUR][1000 genomes]
rs11868102	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11868191	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11868392	1.00[EUR][1000 genomes]
rs11868908	1.00[EUR][1000 genomes]
rs11869415	1.00[EUR][1000 genomes]
rs11869423	1.00[EUR][1000 genomes]
rs11870335	1.00[EUR][1000 genomes]
rs11870441	1.00[EUR][1000 genomes]
rs11870488	1.00[EUR][1000 genomes]
rs11871120	1.00[EUR][1000 genomes]
rs61729732	1.00[EUR][1000 genomes]
rs6502556	1.00[EUR][1000 genomes]
rs6502558	1.00[EUR][1000 genomes]
rs6502559	1.00[EUR][1000 genomes]
rs6502560	1.00[EUR][1000 genomes]
rs7207396	1.00[EUR][1000 genomes]
rs7209447	1.00[EUR][1000 genomes]
rs7211205	1.00[EUR][1000 genomes]
rs7213477	1.00[EUR][1000 genomes]
rs7215338	1.00[EUR][1000 genomes]
rs7215588	1.00[EUR][1000 genomes]
rs7216705	1.00[EUR][1000 genomes]
rs7220492	1.00[EUR][1000 genomes]
rs7221151	1.00[EUR][1000 genomes]
rs7223773	1.00[EUR][1000 genomes]
rs7225532	1.00[EUR][1000 genomes]
rs7225977	1.00[EUR][1000 genomes]
rs8064296	1.00[EUR][1000 genomes]
rs8065260	1.00[EUR][1000 genomes]
rs8066280	1.00[EUR][1000 genomes]
rs8067672	1.00[EUR][1000 genomes]
rs8067959	1.00[EUR][1000 genomes]
rs8068587	1.00[EUR][1000 genomes]
rs8070944	1.00[EUR][1000 genomes]
rs8078661	1.00[EUR][1000 genomes]
rs8080972	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2761948	chr17:16868561-16920568	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv907727	chr17:16892265-16938582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16903200-16921000	Weak transcription	Lung	lung
2	chr17:16904600-16906400	Enhancers	Liver	Liver
3	chr17:16904600-16906600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr17:16904800-16906400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr17:16904800-16906400	Enhancers	A549	lung
6	chr17:16905200-16906200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:16905200-16906200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr17:16905400-16906200	Enhancers	Fetal Thymus	thymus
9	chr17:16905400-16906400	Enhancers	Fetal Muscle Leg	muscle
10	chr17:16905400-16906800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:16905400-16907800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:16905600-16906200	Enhancers	Brain Hippocampus Middle	brain
13	chr17:16905600-16906600	Weak transcription	Fetal Lung	lung
14	chr17:16905600-16907600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr17:16905800-16906200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr17:16905800-16906400	Enhancers	Brain Substantia Nigra	brain
17	chr17:16905800-16920000	Weak transcription	Fetal Intestine Large	intestine
18	chr17:16906000-16906200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:16906000-16906800	Weak transcription	H1 Cell Line	embryonic stem cell

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