Variant report

Variant	rs6502556
Chromosome Location	chr17:16951705-16951706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16950816..16952722-chr17:16954932..16957698,2	MCF-7	breast:
2	chr17:16947403..16948944-chr17:16950340..16952252,2	MCF-7	breast:
3	chr17:16950670..16953293-chr17:16954639..16957612,2	K562	blood:
4	chr17:16944176..16948439-chr17:16950883..16955441,5	K562	blood:
5	chr17:16943909..16948439-chr17:16949478..16955691,9	K562	blood:
6	chr17:16948833..16952528-chr17:16954016..16957501,7	K562	blood:

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11867273	1.00[EUR][1000 genomes]
rs11867723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11868052	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11868102	1.00[EUR][1000 genomes]
rs11868191	1.00[EUR][1000 genomes]
rs11868392	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11868908	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11869283	1.00[CEU][hapmap]
rs11869415	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11869423	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11870335	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11870441	1.00[EUR][1000 genomes]
rs11870488	1.00[EUR][1000 genomes]
rs11871120	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs57958042	1.00[EUR][1000 genomes]
rs61729732	1.00[EUR][1000 genomes]
rs6502557	0.93[YRI][hapmap]
rs6502558	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502559	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6502560	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207396	1.00[EUR][1000 genomes]
rs7209447	1.00[EUR][1000 genomes]
rs7211205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7213477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7215588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7216705	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7220492	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7221151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223773	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225977	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8064296	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8065260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8066280	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067672	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8068587	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8070944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8073346	1.00[CEU][hapmap]
rs8078661	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8080972	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947400-16954000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:16947800-16955200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr17:16948600-16952000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr17:16948800-16951800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:16949000-16951800	Enhancers	Fetal Muscle Trunk	muscle
11	chr17:16949000-16952000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr17:16949000-16952000	Weak transcription	Fetal Intestine Large	intestine
13	chr17:16949000-16952400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:16949000-16952400	Enhancers	NHLF	lung
15	chr17:16949000-16952600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:16949000-16952600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr17:16949000-16952800	Enhancers	Right Atrium	heart
18	chr17:16949000-16953200	Enhancers	Fetal Muscle Leg	muscle
19	chr17:16949000-16954000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:16949000-16954000	Weak transcription	Colonic Mucosa	Colon
21	chr17:16949000-16954000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr17:16949000-16954000	Weak transcription	Thymus	Thymus
23	chr17:16949000-16954200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr17:16949000-16954600	Weak transcription	Gastric	stomach
25	chr17:16949000-16954800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr17:16949000-16955000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr17:16949000-16955000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr17:16949000-16956000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr17:16949000-16956200	Weak transcription	Fetal Brain Female	brain
30	chr17:16949000-16957600	Enhancers	NHDF-Ad	bronchial
31	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
33	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr17:16949000-16975200	Weak transcription	K562	blood
35	chr17:16949200-16952800	Enhancers	Adipose Nuclei	Adipose
36	chr17:16949200-16954000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr17:16949200-16954000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr17:16949200-16954000	Weak transcription	Placenta	Placenta
39	chr17:16949200-16954000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr17:16949200-16954800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr17:16949200-16955000	Weak transcription	NH-A	brain
42	chr17:16949400-16953600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr17:16949600-16951800	Enhancers	Osteobl	bone
44	chr17:16949600-16953200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr17:16949600-16953800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr17:16949600-16953800	Weak transcription	HepG2	liver
47	chr17:16949600-16954800	Weak transcription	HUVEC	blood vessel
48	chr17:16949800-16952000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr17:16949800-16952000	Enhancers	HSMMtube	muscle
50	chr17:16949800-16953200	Enhancers	Skeletal Muscle Female	skeletal muscle

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