Variant report

Variant	rs11869376
Chromosome Location	chr17:67526216-67526217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67522491..67524263-chr17:67526097..67528561,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11657645	0.90[CEU][hapmap]
rs11867183	0.85[CEU][hapmap];0.86[MEX][hapmap]
rs11869553	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17769598	0.90[CEU][hapmap];0.86[MEX][hapmap]
rs3729922	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11869376	AXIN2	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67497600-67530200	Weak transcription	Gastric	stomach
2	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
3	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
4	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
5	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
6	chr17:67499800-67535200	Weak transcription	Small Intestine	intestine
7	chr17:67503000-67530200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr17:67504000-67545200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr17:67505600-67535000	Weak transcription	Esophagus	oesophagus
10	chr17:67508400-67527400	Weak transcription	Brain Anterior Caudate	brain
11	chr17:67511800-67543000	Strong transcription	Primary T cells from cord blood	blood
12	chr17:67512400-67556800	Weak transcription	Fetal Heart	heart
13	chr17:67513200-67544000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr17:67513600-67550400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr17:67515800-67535200	Weak transcription	Dnd41	blood
16	chr17:67516200-67548600	Weak transcription	Brain Germinal Matrix	brain
17	chr17:67517400-67535800	Weak transcription	Left Ventricle	heart
18	chr17:67517600-67529800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr17:67517600-67542800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:67517600-67546000	Weak transcription	HepG2	liver
21	chr17:67518800-67537200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:67519600-67526600	Strong transcription	Fetal Lung	lung
23	chr17:67519600-67527800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr17:67519600-67528800	Strong transcription	Fetal Thymus	thymus
25	chr17:67519600-67534600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr17:67519800-67526400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr17:67519800-67527400	Weak transcription	Adipose Nuclei	Adipose
28	chr17:67519800-67528800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr17:67519800-67529600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr17:67519800-67529600	Weak transcription	Brain Angular Gyrus	brain
31	chr17:67519800-67530000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr17:67519800-67539400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr17:67519800-67539400	Weak transcription	Colon Smooth Muscle	Colon
34	chr17:67519800-67540400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr17:67519800-67540600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr17:67519800-67541600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr17:67519800-67557000	Weak transcription	Pancreas	Pancrea
38	chr17:67520000-67529600	Weak transcription	HUVEC	blood vessel
39	chr17:67520000-67533800	Strong transcription	Fetal Muscle Leg	muscle
40	chr17:67520000-67535400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr17:67521400-67534400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr17:67521600-67529400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr17:67522000-67534800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr17:67522200-67528000	Strong transcription	GM12878-XiMat	blood
45	chr17:67522800-67526400	Strong transcription	Fetal Stomach	stomach
46	chr17:67522800-67534800	Weak transcription	A549	lung
47	chr17:67523000-67529600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr17:67523200-67533600	Weak transcription	Psoas Muscle	Psoas
49	chr17:67523400-67533600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr17:67523400-67534000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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