Variant report

Variant	rs11867183
Chromosome Location	chr17:67507603-67507604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11651278	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11657645	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11869376	0.85[CEU][hapmap];0.86[MEX][hapmap]
rs12940170	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946809	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12948059	0.93[CEU][hapmap];0.98[EUR][1000 genomes]
rs17769598	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34498161	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34521206	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35533573	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3729922	0.90[CEU][hapmap];0.86[MEX][hapmap]
rs66613474	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67612721	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11867183	MAP2K6	cis	cerebellum	SCAN

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:67497600-67511800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr17:67497600-67530200	Weak transcription	Gastric	stomach
6	chr17:67498000-67513200	Weak transcription	Lung	lung
7	chr17:67498400-67513200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:67498400-67513200	Weak transcription	Spleen	Spleen
9	chr17:67498600-67513000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:67498600-67513800	Weak transcription	Fetal Thymus	thymus
11	chr17:67498600-67515400	Weak transcription	Left Ventricle	heart
12	chr17:67498600-67515400	Weak transcription	Ovary	ovary
13	chr17:67498600-67519600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr17:67498600-67523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
16	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
17	chr17:67498800-67515400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr17:67498800-67517000	Weak transcription	Fetal Kidney	kidney
19	chr17:67499000-67513200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr17:67499000-67515400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:67499000-67519000	Weak transcription	Pancreas	Pancrea
22	chr17:67499000-67520000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr17:67499000-67521000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
25	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
26	chr17:67499200-67515200	Weak transcription	HepG2	liver
27	chr17:67499600-67513000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr17:67499600-67513400	Weak transcription	Fetal Stomach	stomach
29	chr17:67499600-67515400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr17:67499600-67520000	Weak transcription	Colonic Mucosa	Colon
31	chr17:67499800-67513000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr17:67499800-67513400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr17:67499800-67515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr17:67499800-67518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr17:67499800-67535200	Weak transcription	Small Intestine	intestine
36	chr17:67500400-67514400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr17:67500600-67514800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr17:67500800-67512400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr17:67501000-67514800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr17:67502200-67509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:67502400-67512200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr17:67502400-67512400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr17:67502400-67513200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr17:67502800-67509200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr17:67502800-67515400	Weak transcription	Psoas Muscle	Psoas
46	chr17:67503000-67508000	Weak transcription	Liver	Liver
47	chr17:67503000-67513200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr17:67503000-67513200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr17:67503000-67513600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr17:67503000-67515200	Weak transcription	Thymus	Thymus

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