Variant report

Variant	rs11651278
Chromosome Location	chr17:67496512-67496513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11657645	0.96[EUR][1000 genomes]
rs11867183	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12940170	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12946809	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12948059	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17769598	0.97[EUR][1000 genomes]
rs34498161	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34521206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35533573	0.96[EUR][1000 genomes]
rs66613474	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67612721	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
2	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:67479400-67497000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:67482000-67497000	Weak transcription	Right Atrium	heart
5	chr17:67482200-67497800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:67483600-67497000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr17:67485000-67501800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr17:67486800-67497000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:67489000-67497000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:67489000-67497200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr17:67489200-67497400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr17:67490400-67497600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr17:67493600-67496800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr17:67493800-67497000	Weak transcription	Fetal Intestine Small	intestine
15	chr17:67494000-67496800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr17:67494000-67497400	Weak transcription	GM12878-XiMat	blood
17	chr17:67494200-67497000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr17:67494200-67497800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr17:67494600-67497200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr17:67494600-67497800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:67494800-67497000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr17:67495000-67496800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr17:67495000-67497000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr17:67495000-67497200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr17:67495000-67497600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr17:67495000-67497600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr17:67495200-67496800	Weak transcription	Fetal Kidney	kidney
30	chr17:67495200-67497000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr17:67495200-67497000	Weak transcription	Psoas Muscle	Psoas
32	chr17:67495200-67497200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr17:67495200-67497600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr17:67495400-67497000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:67495400-67497000	Weak transcription	Primary T cells from cord blood	blood
36	chr17:67495400-67497000	Weak transcription	Colonic Mucosa	Colon
37	chr17:67495400-67497200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr17:67495600-67497000	Weak transcription	A549	lung
39	chr17:67495600-67497400	Weak transcription	Hela-S3	cervix
40	chr17:67495800-67496800	Weak transcription	Adipose Nuclei	Adipose
41	chr17:67495800-67497000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr17:67496000-67497200	Enhancers	Colon Smooth Muscle	Colon
43	chr17:67496000-67497400	Enhancers	Fetal Lung	lung
44	chr17:67496200-67497000	Enhancers	Stomach Smooth Muscle	stomach
45	chr17:67496200-67497200	Enhancers	Fetal Brain Male	brain
46	chr17:67496200-67497200	Enhancers	Fetal Brain Female	brain
47	chr17:67496200-67497800	Enhancers	Fetal Muscle Leg	muscle
48	chr17:67496200-67498400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr17:67496200-67498400	Enhancers	Small Intestine	intestine
50	chr17:67496400-67497600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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