Variant report

Variant	rs34498161
Chromosome Location	chr17:67501133-67501134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr17:67501079-67501211	GM12878	blood:	n/a	n/a
2	CUX1	chr17:67501088-67501175	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MAP2K6	TF binding region
ENSG00000267653	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11651278	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11657645	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11867183	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12940170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946809	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12948059	0.98[EUR][1000 genomes]
rs17769598	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34521206	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35533573	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66613474	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67612721	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr17:67485000-67501800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:67497600-67511800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:67497600-67530200	Weak transcription	Gastric	stomach
7	chr17:67497800-67501800	Enhancers	Primary B cells from peripheral blood	blood
8	chr17:67498000-67513200	Weak transcription	Lung	lung
9	chr17:67498400-67513200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr17:67498400-67513200	Weak transcription	Spleen	Spleen
11	chr17:67498600-67502000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr17:67498600-67513000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr17:67498600-67513800	Weak transcription	Fetal Thymus	thymus
14	chr17:67498600-67515400	Weak transcription	Left Ventricle	heart
15	chr17:67498600-67515400	Weak transcription	Ovary	ovary
16	chr17:67498600-67519600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr17:67498600-67523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
19	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
20	chr17:67498800-67502000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr17:67498800-67515400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr17:67498800-67517000	Weak transcription	Fetal Kidney	kidney
23	chr17:67499000-67501400	Weak transcription	Primary T cells from cord blood	blood
24	chr17:67499000-67501800	Weak transcription	Fetal Muscle Leg	muscle
25	chr17:67499000-67502000	Weak transcription	Fetal Intestine Large	intestine
26	chr17:67499000-67502000	Weak transcription	Thymus	Thymus
27	chr17:67499000-67502200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr17:67499000-67505800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:67499000-67506000	Weak transcription	Fetal Intestine Small	intestine
30	chr17:67499000-67507200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr17:67499000-67513200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr17:67499000-67515400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr17:67499000-67519000	Weak transcription	Pancreas	Pancrea
34	chr17:67499000-67520000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr17:67499000-67521000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
37	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
38	chr17:67499200-67515200	Weak transcription	HepG2	liver
39	chr17:67499400-67502600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr17:67499600-67502200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:67499600-67502400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr17:67499600-67502600	Weak transcription	Fetal Lung	lung
43	chr17:67499600-67502800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr17:67499600-67504400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr17:67499600-67513000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr17:67499600-67513400	Weak transcription	Fetal Stomach	stomach
47	chr17:67499600-67515400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr17:67499600-67520000	Weak transcription	Colonic Mucosa	Colon
49	chr17:67499800-67501800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:67499800-67502000	Weak transcription	Liver	Liver

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