Variant report

Variant	rs17769598
Chromosome Location	chr17:67512735-67512736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11651278	0.97[EUR][1000 genomes]
rs11657645	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11867183	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11869376	0.90[CEU][hapmap];0.86[MEX][hapmap]
rs12940170	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12946809	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12948059	0.87[CEU][hapmap];0.98[EUR][1000 genomes]
rs34498161	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34521206	0.95[EUR][1000 genomes]
rs35533573	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3729922	0.95[CEU][hapmap];0.86[MEX][hapmap]
rs66613474	0.96[EUR][1000 genomes]
rs67612721	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17769598	TSPAN5	trans	parietal	SCAN

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:67497600-67530200	Weak transcription	Gastric	stomach
4	chr17:67498000-67513200	Weak transcription	Lung	lung
5	chr17:67498400-67513200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr17:67498400-67513200	Weak transcription	Spleen	Spleen
7	chr17:67498600-67513000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr17:67498600-67513800	Weak transcription	Fetal Thymus	thymus
9	chr17:67498600-67515400	Weak transcription	Left Ventricle	heart
10	chr17:67498600-67515400	Weak transcription	Ovary	ovary
11	chr17:67498600-67519600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:67498600-67523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
14	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
15	chr17:67498800-67515400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr17:67498800-67517000	Weak transcription	Fetal Kidney	kidney
17	chr17:67499000-67513200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr17:67499000-67515400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:67499000-67519000	Weak transcription	Pancreas	Pancrea
20	chr17:67499000-67520000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:67499000-67521000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
23	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
24	chr17:67499200-67515200	Weak transcription	HepG2	liver
25	chr17:67499600-67513000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr17:67499600-67513400	Weak transcription	Fetal Stomach	stomach
27	chr17:67499600-67515400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr17:67499600-67520000	Weak transcription	Colonic Mucosa	Colon
29	chr17:67499800-67513000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr17:67499800-67513400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:67499800-67515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr17:67499800-67518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr17:67499800-67535200	Weak transcription	Small Intestine	intestine
34	chr17:67500400-67514400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr17:67500600-67514800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr17:67501000-67514800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr17:67502400-67513200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr17:67502800-67515400	Weak transcription	Psoas Muscle	Psoas
39	chr17:67503000-67513200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr17:67503000-67513200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr17:67503000-67513600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr17:67503000-67515200	Weak transcription	Thymus	Thymus
43	chr17:67503000-67515400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr17:67503000-67530200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr17:67503400-67513000	Weak transcription	Fetal Intestine Large	intestine
46	chr17:67503600-67512800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr17:67503800-67513600	Weak transcription	Fetal Lung	lung
48	chr17:67504000-67545200	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr17:67505200-67516800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr17:67505600-67535000	Weak transcription	Esophagus	oesophagus

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