Variant report

Variant	rs3729922
Chromosome Location	chr17:67522903-67522904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67522491..67524263-chr17:67526097..67528561,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11657645	0.95[CEU][hapmap];0.84[AFR][1000 genomes]
rs11867183	0.90[CEU][hapmap];0.86[MEX][hapmap]
rs11869376	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11869553	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12948059	0.81[CEU][hapmap]
rs17769598	0.95[CEU][hapmap];0.86[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3729922	AXIN2	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67497600-67530200	Weak transcription	Gastric	stomach
2	chr17:67498600-67523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
4	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
5	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
6	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
7	chr17:67499800-67535200	Weak transcription	Small Intestine	intestine
8	chr17:67503000-67530200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr17:67504000-67545200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr17:67505600-67535000	Weak transcription	Esophagus	oesophagus
11	chr17:67508400-67527400	Weak transcription	Brain Anterior Caudate	brain
12	chr17:67511800-67543000	Strong transcription	Primary T cells from cord blood	blood
13	chr17:67512400-67556800	Weak transcription	Fetal Heart	heart
14	chr17:67513200-67544000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr17:67513600-67550400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr17:67513800-67523600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:67513800-67523800	Weak transcription	Lung	lung
18	chr17:67514600-67523800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:67515800-67535200	Weak transcription	Dnd41	blood
20	chr17:67516200-67548600	Weak transcription	Brain Germinal Matrix	brain
21	chr17:67517400-67535800	Weak transcription	Left Ventricle	heart
22	chr17:67517600-67529800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr17:67517600-67542800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr17:67517600-67546000	Weak transcription	HepG2	liver
25	chr17:67517800-67523000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr17:67517800-67523000	Weak transcription	Fetal Kidney	kidney
27	chr17:67517800-67523200	Weak transcription	Ovary	ovary
28	chr17:67518800-67537200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr17:67519400-67525400	Strong transcription	Fetal Intestine Large	intestine
30	chr17:67519600-67523000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr17:67519600-67524000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr17:67519600-67524400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr17:67519600-67524600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr17:67519600-67525200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr17:67519600-67525200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr17:67519600-67526600	Strong transcription	Fetal Lung	lung
37	chr17:67519600-67527800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr17:67519600-67528800	Strong transcription	Fetal Thymus	thymus
39	chr17:67519600-67534600	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr17:67519800-67523800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr17:67519800-67524400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr17:67519800-67525400	Strong transcription	Liver	Liver
43	chr17:67519800-67526400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr17:67519800-67527400	Weak transcription	Adipose Nuclei	Adipose
45	chr17:67519800-67528800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr17:67519800-67529600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr17:67519800-67529600	Weak transcription	Brain Angular Gyrus	brain
48	chr17:67519800-67530000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr17:67519800-67539400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr17:67519800-67539400	Weak transcription	Colon Smooth Muscle	Colon

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