Variant report

Variant	rs11657645
Chromosome Location	chr17:67516801-67516802
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11651278	0.96[EUR][1000 genomes]
rs11867183	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11869376	0.90[CEU][hapmap]
rs12940170	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12946809	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12948059	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs17769598	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34498161	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34521206	0.94[EUR][1000 genomes]
rs35533573	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3729922	0.95[CEU][hapmap];0.84[AFR][1000 genomes]
rs66613474	0.95[EUR][1000 genomes]
rs67612721	0.97[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:67497600-67530200	Weak transcription	Gastric	stomach
4	chr17:67498600-67519600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:67498600-67523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
7	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
8	chr17:67498800-67517000	Weak transcription	Fetal Kidney	kidney
9	chr17:67499000-67519000	Weak transcription	Pancreas	Pancrea
10	chr17:67499000-67520000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:67499000-67521000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
13	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
14	chr17:67499600-67520000	Weak transcription	Colonic Mucosa	Colon
15	chr17:67499800-67518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr17:67499800-67535200	Weak transcription	Small Intestine	intestine
17	chr17:67503000-67530200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr17:67504000-67545200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr17:67505600-67535000	Weak transcription	Esophagus	oesophagus
20	chr17:67506200-67519600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr17:67507600-67521400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr17:67507800-67519200	Weak transcription	Brain Hippocampus Middle	brain
23	chr17:67508000-67519400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr17:67508400-67519200	Weak transcription	Brain Substantia Nigra	brain
25	chr17:67508400-67527400	Weak transcription	Brain Anterior Caudate	brain
26	chr17:67511400-67519600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr17:67511600-67519600	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr17:67511800-67543000	Strong transcription	Primary T cells from cord blood	blood
29	chr17:67512200-67517800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr17:67512400-67518400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr17:67512400-67556800	Weak transcription	Fetal Heart	heart
32	chr17:67512600-67521000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr17:67512800-67518400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr17:67512800-67519600	Strong transcription	Liver	Liver
35	chr17:67513000-67517800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr17:67513000-67517800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr17:67513000-67518200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr17:67513000-67518400	Strong transcription	Fetal Intestine Large	intestine
39	chr17:67513200-67517800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr17:67513200-67517800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr17:67513200-67517800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr17:67513200-67544000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr17:67513400-67517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr17:67513400-67517800	Strong transcription	Fetal Muscle Leg	muscle
45	chr17:67513600-67517600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr17:67513600-67517600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr17:67513600-67517600	Strong transcription	Fetal Lung	lung
48	chr17:67513600-67517800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr17:67513600-67518400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr17:67513600-67550400	Strong transcription	Monocytes-CD14+_RO01746	blood

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