Variant report

Variant	rs67612721
Chromosome Location	chr17:67497381-67497382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr17:67497338-67497465	HepG2	liver:	n/a	n/a
2	TCF7L2	chr17:67496998-67498502	PANC-1	pancreas:	n/a	chr17:67497988-67498002 chr17:67497989-67497999
3	MAFK	chr17:67497316-67497563	HepG2	liver:	n/a	n/a
4	POLR2A	chr17:67497129-67497637	PANC-1	pancreas:	n/a	n/a
5	MYC	chr17:67497051-67498346	MCF10A-Er-Src	breast:	n/a	chr17:67497439-67497446 chr17:67497790-67497799

Variant related genes	Relation type
MAP2K6	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11651278	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11657645	0.97[EUR][1000 genomes]
rs11867183	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12940170	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946809	0.99[EUR][1000 genomes]
rs12948059	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17769598	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34498161	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34521206	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35533573	0.98[EUR][1000 genomes]
rs66613474	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
2	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:67482200-67497800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr17:67485000-67501800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr17:67489200-67497400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:67490400-67497600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr17:67494000-67497400	Weak transcription	GM12878-XiMat	blood
8	chr17:67494200-67497800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr17:67494600-67497800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:67495000-67497600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr17:67495000-67497600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr17:67495200-67497600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr17:67495600-67497400	Weak transcription	Hela-S3	cervix
16	chr17:67496000-67497400	Enhancers	Fetal Lung	lung
17	chr17:67496200-67497800	Enhancers	Fetal Muscle Leg	muscle
18	chr17:67496200-67498400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr17:67496200-67498400	Enhancers	Small Intestine	intestine
20	chr17:67496400-67497600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr17:67496400-67497600	Enhancers	Liver	Liver
22	chr17:67496400-67498000	Enhancers	Fetal Stomach	stomach
23	chr17:67496800-67497400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr17:67496800-67497600	Enhancers	Ovary	ovary
25	chr17:67496800-67498000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr17:67496800-67498000	Enhancers	Fetal Kidney	kidney
27	chr17:67497000-67497400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr17:67497000-67497400	Enhancers	Brain Angular Gyrus	brain
29	chr17:67497000-67497400	Enhancers	Brain Hippocampus Middle	brain
30	chr17:67497000-67497400	Enhancers	Brain Substantia Nigra	brain
31	chr17:67497000-67497400	Enhancers	Colonic Mucosa	Colon
32	chr17:67497000-67497400	Enhancers	Pancreas	Pancrea
33	chr17:67497000-67497600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr17:67497000-67497600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr17:67497000-67497600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr17:67497000-67497600	Enhancers	Fetal Intestine Large	intestine
37	chr17:67497000-67497600	Enhancers	Gastric	stomach
38	chr17:67497000-67497600	Active TSS	Rectal Smooth Muscle	rectum
39	chr17:67497000-67497600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr17:67497000-67497600	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr17:67497000-67497600	Enhancers	A549	lung
42	chr17:67497000-67497600	Enhancers	HepG2	liver
43	chr17:67497000-67497600	Enhancers	NHLF	lung
44	chr17:67497000-67497800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr17:67497000-67497800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr17:67497000-67497800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr17:67497000-67497800	Enhancers	Brain Anterior Caudate	brain
48	chr17:67497000-67497800	Flanking Active TSS	Brain Germinal Matrix	brain
49	chr17:67497000-67497800	Enhancers	Duodenum Mucosa	Duodenum
50	chr17:67497000-67497800	Enhancers	Fetal Intestine Small	intestine

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