Variant report

Variant	rs12940170
Chromosome Location	chr17:67502614-67502615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:67502467-67503172	A549	lung:	n/a	n/a
2	TEAD4	chr17:67502593-67502998	H1-hESC	embryonic stem cell:	n/a	chr17:67502837-67502846
3	TEAD4	chr17:67502579-67503049	HepG2	liver:	n/a	chr17:67502837-67502846
4	TEAD4	chr17:67502566-67503113	ECC-1	luminal epithelium:	n/a	chr17:67502837-67502846
5	CTCF	chr17:67502480-67502630	K562	blood:	n/a	n/a
6	TEAD4	chr17:67502592-67503100	HCT-116	colon:	n/a	chr17:67502837-67502846
7	CTCF	chr17:67502587-67502917	HepG2	liver:	n/a	n/a
8	TEAD4	chr17:67502612-67503138	HCT-116	colon:	n/a	chr17:67502837-67502846

Variant related genes	Relation type
ENSG00000267653	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11651278	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11657645	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11867183	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946809	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12948059	0.98[EUR][1000 genomes]
rs17769598	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34498161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34521206	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35533573	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66613474	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67612721	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:67497600-67511800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr17:67497600-67530200	Weak transcription	Gastric	stomach
6	chr17:67498000-67513200	Weak transcription	Lung	lung
7	chr17:67498400-67513200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:67498400-67513200	Weak transcription	Spleen	Spleen
9	chr17:67498600-67513000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:67498600-67513800	Weak transcription	Fetal Thymus	thymus
11	chr17:67498600-67515400	Weak transcription	Left Ventricle	heart
12	chr17:67498600-67515400	Weak transcription	Ovary	ovary
13	chr17:67498600-67519600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr17:67498600-67523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
16	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
17	chr17:67498800-67515400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr17:67498800-67517000	Weak transcription	Fetal Kidney	kidney
19	chr17:67499000-67505800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:67499000-67506000	Weak transcription	Fetal Intestine Small	intestine
21	chr17:67499000-67507200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr17:67499000-67513200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr17:67499000-67515400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr17:67499000-67519000	Weak transcription	Pancreas	Pancrea
25	chr17:67499000-67520000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:67499000-67521000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
28	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
29	chr17:67499200-67515200	Weak transcription	HepG2	liver
30	chr17:67499600-67502800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr17:67499600-67504400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:67499600-67513000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr17:67499600-67513400	Weak transcription	Fetal Stomach	stomach
34	chr17:67499600-67515400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr17:67499600-67520000	Weak transcription	Colonic Mucosa	Colon
36	chr17:67499800-67513000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr17:67499800-67513400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr17:67499800-67515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr17:67499800-67518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr17:67499800-67535200	Weak transcription	Small Intestine	intestine
41	chr17:67500200-67502800	Enhancers	Psoas Muscle	Psoas
42	chr17:67500400-67514400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr17:67500600-67514800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr17:67500800-67502800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr17:67500800-67504000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
46	chr17:67500800-67512400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr17:67501000-67514800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr17:67501400-67504000	Strong transcription	Primary T cells from cord blood	blood
49	chr17:67501600-67503400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr17:67501800-67503000	Strong transcription	Duodenum Mucosa	Duodenum

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