Variant report

Variant	rs11886226
Chromosome Location	chr2:33461618-33461619
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10048733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10084248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10167324	0.89[ASN][1000 genomes]
rs10167399	0.89[ASN][1000 genomes]
rs10170980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10173416	1.00[ASN][1000 genomes]
rs10189948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10195782	0.89[ASN][1000 genomes]
rs10201015	0.89[ASN][1000 genomes]
rs10201397	0.89[ASN][1000 genomes]
rs10201620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10204479	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10205515	0.89[ASN][1000 genomes]
rs10514773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11675702	1.00[ASN][1000 genomes]
rs11685108	0.81[TSI][hapmap]
rs11686962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs11691887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs11692723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11886337	0.89[ASN][1000 genomes]
rs11898777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13392128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13408945	0.89[ASN][1000 genomes]
rs13417478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13417974	0.84[ASN][1000 genomes]
rs13431080	0.84[ASN][1000 genomes]
rs17012612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17012615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17012621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17012646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17012655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17012657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17012674	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17012680	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17012691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17012720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[ASN][1000 genomes]
rs17012778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1812485	0.81[TSI][hapmap]
rs2004437	0.95[ASN][1000 genomes]
rs2290427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2290447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3769546	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4578839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4641915	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs55852365	0.95[ASN][1000 genomes]
rs57095191	0.89[ASN][1000 genomes]
rs57119251	0.89[ASN][1000 genomes]
rs57408328	0.84[ASN][1000 genomes]
rs60523332	0.89[ASN][1000 genomes]
rs60912788	0.84[ASN][1000 genomes]
rs61609498	0.84[ASN][1000 genomes]
rs61754245	1.00[ASN][1000 genomes]
rs6543693	0.84[ASN][1000 genomes]
rs6543694	0.84[ASN][1000 genomes]
rs6543695	0.84[ASN][1000 genomes]
rs6543696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6543697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6706122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6718325	0.84[ASN][1000 genomes]
rs6722904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6728561	0.89[ASN][1000 genomes]
rs6730109	0.84[ASN][1000 genomes]
rs6730341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6734291	0.89[ASN][1000 genomes]
rs6746796	0.84[ASN][1000 genomes]
rs6752708	0.89[ASN][1000 genomes]
rs6757287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6757381	0.89[ASN][1000 genomes]
rs6760864	1.00[ASN][1000 genomes]
rs72855723	0.84[ASN][1000 genomes]
rs72855746	0.89[ASN][1000 genomes]
rs72855774	0.89[ASN][1000 genomes]
rs72855787	0.89[ASN][1000 genomes]
rs72858037	0.89[ASN][1000 genomes]
rs72858071	1.00[ASN][1000 genomes]
rs72858072	1.00[ASN][1000 genomes]
rs73927364	0.95[ASN][1000 genomes]
rs7583435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7603774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7606937	0.89[ASN][1000 genomes]
rs9308932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs964701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33403800-33489800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33442600-33467600	Weak transcription	Ovary	ovary
3	chr2:33442800-33471400	Weak transcription	Psoas Muscle	Psoas
4	chr2:33447400-33468200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:33449400-33466200	Weak transcription	Fetal Heart	heart
6	chr2:33449400-33475400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:33451800-33466200	Weak transcription	Left Ventricle	heart
8	chr2:33455800-33466800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:33455800-33470600	Weak transcription	Fetal Kidney	kidney
10	chr2:33456800-33463200	Weak transcription	Aorta	Aorta
11	chr2:33461200-33462200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:33461200-33462800	Enhancers	Fetal Lung	lung
13	chr2:33461200-33463400	Enhancers	A549	lung
14	chr2:33461200-33463400	Enhancers	NH-A	brain
15	chr2:33461200-33463600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:33461200-33464000	Enhancers	NHEK	skin
17	chr2:33461200-33464200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:33461200-33464200	Enhancers	HMEC	breast
19	chr2:33461200-33464200	Enhancers	Osteobl	bone
20	chr2:33461200-33465600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:33461200-33468600	Enhancers	HUVEC	blood vessel
22	chr2:33461400-33461800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:33461400-33462000	Enhancers	Hela-S3	cervix
24	chr2:33461400-33462200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:33461400-33462400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:33461400-33462600	Enhancers	NHDF-Ad	bronchial
27	chr2:33461400-33463400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr2:33461400-33463800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:33461400-33463800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:33461400-33463800	Enhancers	NHLF	lung
31	chr2:33461600-33462000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:33461600-33462200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:33461600-33462200	Enhancers	HSMM	muscle

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