Variant report

Variant	rs11887788
Chromosome Location	chr2:37009942-37009943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37006258..37010448-chr2:37010681..37014372,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11884536	1.00[EUR][1000 genomes]
rs11888961	1.00[EUR][1000 genomes]
rs11897052	1.00[EUR][1000 genomes]
rs11899290	1.00[EUR][1000 genomes]
rs11899319	1.00[EUR][1000 genomes]
rs11904358	1.00[EUR][1000 genomes]
rs11904545	1.00[EUR][1000 genomes]
rs17019724	1.00[EUR][1000 genomes]
rs17019725	1.00[EUR][1000 genomes]
rs17019730	1.00[EUR][1000 genomes]
rs2041829	1.00[EUR][1000 genomes]
rs2110883	1.00[EUR][1000 genomes]
rs2160332	1.00[EUR][1000 genomes]
rs2160336	1.00[EUR][1000 genomes]
rs4670628	1.00[EUR][1000 genomes]
rs6706949	1.00[EUR][1000 genomes]
rs6706964	1.00[EUR][1000 genomes]
rs6758960	1.00[EUR][1000 genomes]
rs6758975	1.00[EUR][1000 genomes]
rs6759999	1.00[EUR][1000 genomes]
rs73927029	1.00[EUR][1000 genomes]
rs73927067	1.00[EUR][1000 genomes]
rs73927068	1.00[EUR][1000 genomes]
rs73927069	1.00[EUR][1000 genomes]
rs73927072	1.00[EUR][1000 genomes]
rs7424163	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv1821275	chr2:36991736-37018278	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37006000-37014600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:37007600-37012600	Weak transcription	Ovary	ovary
3	chr2:37007800-37010000	Enhancers	Fetal Brain Male	brain
4	chr2:37007800-37012200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:37007800-37012200	Weak transcription	Liver	Liver
6	chr2:37007800-37012200	Weak transcription	Stomach Mucosa	stomach
7	chr2:37008000-37010200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:37008200-37012200	Weak transcription	Fetal Heart	heart
9	chr2:37009000-37010000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:37009000-37010000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:37009000-37010000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr2:37009000-37010200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:37009000-37010200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:37009000-37010800	Enhancers	Fetal Muscle Leg	muscle
15	chr2:37009200-37010000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr2:37009200-37010000	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr2:37009400-37010000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:37009400-37010000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr2:37009400-37010000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr2:37009400-37010000	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr2:37009400-37010000	Enhancers	HUVEC	blood vessel
22	chr2:37009400-37010000	Bivalent/Poised TSS	K562	blood
23	chr2:37009400-37010800	Enhancers	Fetal Stomach	stomach
24	chr2:37009400-37010800	Enhancers	Right Atrium	heart
25	chr2:37009400-37011000	Enhancers	Fetal Kidney	kidney
26	chr2:37009600-37010000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr2:37009600-37010000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:37009600-37010000	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr2:37009600-37011200	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr2:37009600-37011400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr2:37009600-37011400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr2:37009600-37011800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr2:37009800-37010000	Enhancers	Brain Anterior Caudate	brain
34	chr2:37009800-37010000	Enhancers	Stomach Smooth Muscle	stomach
35	chr2:37009800-37010000	Active TSS	Osteobl	bone
36	chr2:37009800-37010600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:37009800-37010600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr2:37009800-37012400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:37009800-37016200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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