Variant report

Variant	rs6758960
Chromosome Location	chr2:37051077-37051078
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11124550	0.87[AMR][1000 genomes]
rs11884536	1.00[EUR][1000 genomes]
rs11887788	1.00[EUR][1000 genomes]
rs11888961	1.00[EUR][1000 genomes]
rs11892892	1.00[AMR][1000 genomes]
rs11897052	1.00[EUR][1000 genomes]
rs11899290	1.00[EUR][1000 genomes]
rs11899319	1.00[EUR][1000 genomes]
rs11904358	1.00[EUR][1000 genomes]
rs11904545	1.00[EUR][1000 genomes]
rs17019724	1.00[EUR][1000 genomes]
rs17019725	1.00[EUR][1000 genomes]
rs17019730	1.00[EUR][1000 genomes]
rs2041829	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2110883	1.00[EUR][1000 genomes]
rs2160332	1.00[EUR][1000 genomes]
rs2160336	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2540927	0.87[AMR][1000 genomes]
rs2540935	0.87[AMR][1000 genomes]
rs2540938	0.87[AMR][1000 genomes]
rs2717498	0.87[AMR][1000 genomes]
rs2717504	1.00[AMR][1000 genomes]
rs4670628	1.00[EUR][1000 genomes]
rs6706949	1.00[EUR][1000 genomes]
rs6706964	1.00[EUR][1000 genomes]
rs6758975	1.00[EUR][1000 genomes]
rs6759999	1.00[EUR][1000 genomes]
rs73927029	1.00[EUR][1000 genomes]
rs73927067	1.00[EUR][1000 genomes]
rs73927068	1.00[EUR][1000 genomes]
rs73927069	1.00[EUR][1000 genomes]
rs73927072	1.00[EUR][1000 genomes]
rs7424163	1.00[EUR][1000 genomes]
rs7593630	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37045200-37051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37048800-37051200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:37049000-37051400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:37049200-37051200	Weak transcription	Fetal Stomach	stomach
5	chr2:37049400-37051400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:37049800-37051400	Weak transcription	Right Atrium	heart
7	chr2:37050600-37051400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:37050600-37051400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:37050600-37052000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:37051000-37051600	Weak transcription	Adipose Nuclei	Adipose

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