Variant report

Variant	rs11897052
Chromosome Location	chr2:37038715-37038716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37038445..37041439-chr2:37044172..37046404,2	MCF-7	breast:
2	chr2:37038416..37040674-chr2:37042878..37045165,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11884536	1.00[EUR][1000 genomes]
rs11887788	1.00[EUR][1000 genomes]
rs11888961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891319	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11894436	1.00[AMR][1000 genomes]
rs11899290	1.00[EUR][1000 genomes]
rs11899319	1.00[EUR][1000 genomes]
rs11904358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11904545	1.00[EUR][1000 genomes]
rs17019724	1.00[EUR][1000 genomes]
rs17019725	1.00[EUR][1000 genomes]
rs17019730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2041829	1.00[EUR][1000 genomes]
rs2110883	1.00[EUR][1000 genomes]
rs2160332	1.00[EUR][1000 genomes]
rs2160336	1.00[EUR][1000 genomes]
rs4670628	1.00[EUR][1000 genomes]
rs6706949	1.00[EUR][1000 genomes]
rs6706964	1.00[EUR][1000 genomes]
rs6758960	1.00[EUR][1000 genomes]
rs6758975	1.00[EUR][1000 genomes]
rs6759999	1.00[EUR][1000 genomes]
rs73924906	1.00[AMR][1000 genomes]
rs73927029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73927067	1.00[EUR][1000 genomes]
rs73927068	1.00[EUR][1000 genomes]
rs73927069	1.00[EUR][1000 genomes]
rs73927072	1.00[EUR][1000 genomes]
rs7424163	1.00[EUR][1000 genomes]
rs759427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37027400-37044200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:37034600-37042800	Weak transcription	Ovary	ovary
3	chr2:37036000-37042600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:37036200-37044200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:37036400-37039200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:37037800-37042800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:37038400-37040000	Enhancers	Aorta	Aorta

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