Variant report

Variant	rs2110883
Chromosome Location	chr2:37047528-37047529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37047490..37050281-chr2:37192919..37195129,2	K562	blood:
2	chr2:37045354..37047713-chr2:37230824..37232867,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115808	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1019311	1.00[TSI][hapmap]
rs10490662	1.00[TSI][hapmap]
rs11884536	1.00[EUR][1000 genomes]
rs11887788	1.00[EUR][1000 genomes]
rs11888961	1.00[EUR][1000 genomes]
rs11891319	1.00[TSI][hapmap]
rs11897052	1.00[EUR][1000 genomes]
rs11899290	1.00[EUR][1000 genomes]
rs11899319	1.00[EUR][1000 genomes]
rs11901202	1.00[TSI][hapmap]
rs11902881	1.00[TSI][hapmap]
rs11904358	1.00[EUR][1000 genomes]
rs11904545	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17019724	1.00[EUR][1000 genomes]
rs17019725	1.00[EUR][1000 genomes]
rs17019730	1.00[EUR][1000 genomes]
rs17019851	1.00[TSI][hapmap]
rs17019854	1.00[TSI][hapmap]
rs2041829	1.00[EUR][1000 genomes]
rs2160332	1.00[EUR][1000 genomes]
rs2160336	1.00[EUR][1000 genomes]
rs2540934	1.00[TSI][hapmap]
rs2691117	1.00[TSI][hapmap]
rs2717515	1.00[TSI][hapmap]
rs4670606	1.00[TSI][hapmap]
rs4670628	1.00[EUR][1000 genomes]
rs6706949	1.00[EUR][1000 genomes]
rs6706964	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6708710	1.00[TSI][hapmap]
rs6710234	1.00[TSI][hapmap]
rs6758960	1.00[EUR][1000 genomes]
rs6758975	1.00[EUR][1000 genomes]
rs6759999	1.00[EUR][1000 genomes]
rs73927029	1.00[EUR][1000 genomes]
rs73927067	1.00[EUR][1000 genomes]
rs73927068	1.00[EUR][1000 genomes]
rs73927069	1.00[EUR][1000 genomes]
rs73927072	1.00[EUR][1000 genomes]
rs7424163	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs929640	1.00[TSI][hapmap]
rs974964	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	esv2756916	chr2:37047353-37048951	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2759042	chr2:37047353-37048951	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37044200-37051000	Enhancers	Adipose Nuclei	Adipose
2	chr2:37045000-37047800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr2:37045200-37051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:37045600-37048000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr2:37045600-37049600	Enhancers	Stomach Mucosa	stomach
6	chr2:37045600-37050000	Enhancers	Duodenum Mucosa	Duodenum
7	chr2:37045800-37048200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr2:37046200-37049200	Enhancers	HepG2	liver
9	chr2:37046600-37049600	Enhancers	Liver	Liver
10	chr2:37047000-37048200	Enhancers	Colonic Mucosa	Colon
11	chr2:37047200-37050600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:37047400-37047600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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