Variant report

Variant	rs6706964
Chromosome Location	chr2:37014040-37014041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37011366..37014092-chr2:37310068..37313025,2	K562	blood:
2	chr2:37006258..37010448-chr2:37010681..37014372,3	K562	blood:

Variant related genes	Relation type
ENSG00000152133	Chromatin interaction
ENSG00000008869	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1019311	1.00[TSI][hapmap]
rs10490662	1.00[TSI][hapmap]
rs11884536	1.00[EUR][1000 genomes]
rs11887788	1.00[EUR][1000 genomes]
rs11888961	1.00[EUR][1000 genomes]
rs11891319	1.00[TSI][hapmap]
rs11897052	1.00[EUR][1000 genomes]
rs11899290	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11899319	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11901202	1.00[TSI][hapmap]
rs11902881	1.00[TSI][hapmap]
rs11904358	1.00[EUR][1000 genomes]
rs11904545	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17019724	1.00[EUR][1000 genomes]
rs17019725	1.00[EUR][1000 genomes]
rs17019730	1.00[EUR][1000 genomes]
rs17019851	1.00[TSI][hapmap]
rs17019854	1.00[TSI][hapmap]
rs2041829	1.00[EUR][1000 genomes]
rs2110883	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2160332	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2160336	1.00[EUR][1000 genomes]
rs2540934	1.00[TSI][hapmap]
rs2691117	1.00[TSI][hapmap]
rs2717515	1.00[TSI][hapmap]
rs4670606	1.00[TSI][hapmap]
rs4670628	1.00[EUR][1000 genomes]
rs6706949	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710234	1.00[TSI][hapmap]
rs6758960	1.00[EUR][1000 genomes]
rs6758975	1.00[EUR][1000 genomes]
rs6759999	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73927029	1.00[EUR][1000 genomes]
rs73927067	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73927068	1.00[EUR][1000 genomes]
rs73927069	1.00[EUR][1000 genomes]
rs73927072	1.00[EUR][1000 genomes]
rs7424163	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs929640	1.00[TSI][hapmap]
rs974964	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv1821275	chr2:36991736-37018278	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6706964	FHL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37006000-37014600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:37009800-37016200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:37010000-37016000	Weak transcription	Brain Anterior Caudate	brain
4	chr2:37010000-37021600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:37012400-37014400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:37012400-37016400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:37012800-37016200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:37012800-37016200	Weak transcription	Fetal Thymus	thymus
9	chr2:37012800-37024800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:37013000-37015600	Weak transcription	Fetal Heart	heart
11	chr2:37013000-37016200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:37013000-37016200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:37013000-37033000	Weak transcription	Ovary	ovary
14	chr2:37013200-37024400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:37013400-37016200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr2:37014000-37014200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:37014000-37014200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:37014000-37014600	Enhancers	H9 Cell Line	embryonic stem cell

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