Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11884536	1.00[EUR][1000 genomes]
rs11887788	1.00[EUR][1000 genomes]
rs11888961	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11897052	1.00[EUR][1000 genomes]
rs11899290	1.00[EUR][1000 genomes]
rs11899319	1.00[EUR][1000 genomes]
rs11904358	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11904545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17019724	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17019725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17019730	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2041829	1.00[EUR][1000 genomes]
rs2110883	1.00[EUR][1000 genomes]
rs2160332	1.00[EUR][1000 genomes]
rs2160336	1.00[EUR][1000 genomes]
rs4670628	1.00[EUR][1000 genomes]
rs6706949	1.00[EUR][1000 genomes]
rs6706964	1.00[EUR][1000 genomes]
rs6758960	1.00[EUR][1000 genomes]
rs6758975	1.00[EUR][1000 genomes]
rs6759999	1.00[EUR][1000 genomes]
rs73927029	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73927067	1.00[EUR][1000 genomes]
rs73927068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73927072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7424163	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37010000-37021600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:37012800-37024800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:37013000-37033000	Weak transcription	Ovary	ovary
4	chr2:37013200-37024400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:37016200-37018600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:37016200-37019600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:37016800-37020200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:37016800-37024600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:37018400-37019200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:37018400-37021200	Enhancers	Thymus	Thymus
11	chr2:37018400-37021400	Enhancers	Fetal Thymus	thymus

Quick Search: