Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:20212605..20214922-chr2:20216980..20220655,3	MCF-7	breast:
2	chr2:20218756..20221372-chr2:20222050..20225276,4	MCF-7	breast:
3	chr2:20208645..20229804-chr2:20247969..20254330,37	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1016316	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11689320	0.85[EUR][1000 genomes]
rs11694170	0.82[EUR][1000 genomes]
rs11695154	0.83[EUR][1000 genomes]
rs1191809	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1191810	0.91[AMR][1000 genomes]
rs1191811	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1191812	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1191817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473890	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513830	0.83[EUR][1000 genomes]
rs1513831	0.82[EUR][1000 genomes]
rs16987338	0.80[EUR][1000 genomes]
rs2244939	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2704611	0.85[AFR][1000 genomes]
rs34539547	0.86[EUR][1000 genomes]
rs36071721	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3731673	0.85[EUR][1000 genomes]
rs3769759	0.85[EUR][1000 genomes]
rs3769760	0.85[EUR][1000 genomes]
rs3769762	0.84[EUR][1000 genomes]
rs62109431	0.85[EUR][1000 genomes]
rs6706375	0.85[EUR][1000 genomes]
rs6720508	0.82[EUR][1000 genomes]
rs7558777	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7558988	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7570360	0.87[EUR][1000 genomes]
rs7587612	0.80[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20213000-20220600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:20213000-20227200	Weak transcription	Ovary	ovary
3	chr2:20213200-20225000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:20213200-20227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:20213200-20227000	Weak transcription	Aorta	Aorta
6	chr2:20213400-20227400	Weak transcription	Fetal Kidney	kidney
7	chr2:20213400-20232200	Weak transcription	Right Ventricle	heart
8	chr2:20213600-20227000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:20216400-20227800	Weak transcription	Fetal Intestine Large	intestine
10	chr2:20216400-20228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:20216600-20220400	Weak transcription	HepG2	liver
12	chr2:20216800-20224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:20217400-20220400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:20219400-20227000	Weak transcription	Left Ventricle	heart
15	chr2:20220000-20221200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:20220200-20222400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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