Variant report

Variant	rs36071721
Chromosome Location	chr2:20228581-20228582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20226527..20228627-chr2:20238902..20240937,2	K562	blood:
2	chr2:20226540..20229292-chr2:20236762..20238509,2	MCF-7	breast:
3	chr2:20227551..20229424-chr2:20265171..20267107,2	MCF-7	breast:
4	chr2:20225520..20228752-chr2:20271563..20273448,3	MCF-7	breast:
5	chr2:20208645..20229804-chr2:20247969..20254330,37	MCF-7	breast:
6	chr2:20211636..20214222-chr2:20226040..20228717,2	MCF-7	breast:
7	chr2:20225886..20230691-chr2:20231442..20234777,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000132031	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1016316	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11689320	0.92[EUR][1000 genomes]
rs11694170	0.89[EUR][1000 genomes]
rs11695154	0.90[EUR][1000 genomes]
rs1191805	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1191809	0.81[AMR][1000 genomes]
rs1191811	0.81[AMR][1000 genomes]
rs1191812	0.81[AMR][1000 genomes]
rs1191817	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1473890	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513830	0.90[EUR][1000 genomes]
rs1513831	0.89[EUR][1000 genomes]
rs16987338	0.87[EUR][1000 genomes]
rs2244939	0.81[AMR][1000 genomes]
rs34539547	0.93[EUR][1000 genomes]
rs3731673	0.92[EUR][1000 genomes]
rs3769759	0.92[EUR][1000 genomes]
rs3769760	0.92[EUR][1000 genomes]
rs3769762	0.91[EUR][1000 genomes]
rs62109431	0.92[EUR][1000 genomes]
rs6706375	0.92[EUR][1000 genomes]
rs6720508	0.89[EUR][1000 genomes]
rs7558777	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7558988	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7570360	0.93[EUR][1000 genomes]
rs7587612	0.87[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20213400-20232200	Weak transcription	Right Ventricle	heart
2	chr2:20216400-20228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:20221400-20230000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:20221400-20230000	Weak transcription	Colonic Mucosa	Colon
5	chr2:20221400-20233200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:20221400-20249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:20222200-20229800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:20222400-20231200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:20222600-20230000	Weak transcription	Pancreas	Pancrea
10	chr2:20222800-20233200	Weak transcription	Right Atrium	heart
11	chr2:20223000-20229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:20223000-20230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:20223000-20233000	Weak transcription	NHEK	skin
14	chr2:20223800-20232200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:20225000-20230000	Weak transcription	Lung	lung
16	chr2:20225200-20231000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:20225400-20228800	Weak transcription	Brain Anterior Caudate	brain
18	chr2:20225400-20230000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:20225400-20230000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:20225400-20230000	Weak transcription	NHLF	lung
21	chr2:20225400-20231200	Weak transcription	HMEC	breast
22	chr2:20225400-20240600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:20225600-20230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:20225600-20230000	Weak transcription	Thymus	Thymus
25	chr2:20225800-20230000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:20225800-20230600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr2:20225800-20232600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:20226200-20229200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr2:20226200-20229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr2:20226400-20229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:20226400-20231000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr2:20226600-20228600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:20226600-20236200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr2:20226800-20229600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr2:20226800-20232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:20226800-20236200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:20227000-20228600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:20227000-20228800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:20227000-20228800	Weak transcription	Fetal Brain Male	brain
40	chr2:20227000-20229600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:20227000-20229600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr2:20227000-20229600	Strong transcription	Fetal Brain Female	brain
43	chr2:20227000-20229800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr2:20227000-20230000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr2:20227000-20230400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr2:20227000-20230800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:20227000-20231800	Strong transcription	Brain Hippocampus Middle	brain
48	chr2:20227000-20234200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:20227000-20236200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr2:20227000-20239800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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