Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:20214554..20219540-chr2:20268505..20271599,4	MCF-7	breast:
2	chr2:20215693..20217676-chr2:20220990..20223704,2	MCF-7	breast:
3	chr2:20212605..20214922-chr2:20216980..20220655,3	MCF-7	breast:
4	chr2:20215704..20218308-chr2:20221875..20224870,4	MCF-7	breast:
5	chr2:20091934..20093841-chr2:20217101..20219993,2	K562	blood:
6	chr2:20214302..20217183-chr2:20301641..20303761,2	MCF-7	breast:
7	chr2:20208645..20229804-chr2:20247969..20254330,37	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1016316	0.94[EUR][1000 genomes]
rs11674251	0.94[ASN][1000 genomes]
rs11689320	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11689431	0.89[ASN][1000 genomes]
rs11694170	0.94[EUR][1000 genomes]
rs11695154	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1191805	0.87[EUR][1000 genomes]
rs1191817	0.86[EUR][1000 genomes]
rs12988954	0.95[ASN][1000 genomes]
rs1473887	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1473890	0.93[EUR][1000 genomes]
rs1513830	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1513831	0.94[EUR][1000 genomes]
rs16987338	0.92[EUR][1000 genomes]
rs34539547	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36071721	0.93[EUR][1000 genomes]
rs3731673	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3769759	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3769760	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3769762	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62109427	0.87[ASN][1000 genomes]
rs62109431	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6706375	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6720508	0.94[EUR][1000 genomes]
rs7558777	0.92[EUR][1000 genomes]
rs7558988	0.89[EUR][1000 genomes]
rs7587612	0.92[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20213000-20218400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:20213000-20220600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:20213000-20227200	Weak transcription	Ovary	ovary
4	chr2:20213200-20218400	Weak transcription	Fetal Heart	heart
5	chr2:20213200-20225000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:20213200-20227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:20213200-20227000	Weak transcription	Aorta	Aorta
8	chr2:20213400-20227400	Weak transcription	Fetal Kidney	kidney
9	chr2:20213400-20232200	Weak transcription	Right Ventricle	heart
10	chr2:20213600-20227000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:20214800-20220200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:20216400-20227800	Weak transcription	Fetal Intestine Large	intestine
13	chr2:20216400-20228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:20216600-20220400	Weak transcription	HepG2	liver
15	chr2:20216800-20224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:20217000-20217400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: