Variant report

Variant	rs7558777
Chromosome Location	chr2:20226403-20226404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20225238..20227093-chr2:20270097..20272850,2	MCF-7	breast:
2	chr2:20099594..20101942-chr2:20226231..20228196,2	K562	blood:
3	chr2:20225520..20228752-chr2:20271563..20273448,3	MCF-7	breast:
4	chr2:20208645..20229804-chr2:20247969..20254330,37	MCF-7	breast:
5	chr2:20211636..20214222-chr2:20226040..20228717,2	MCF-7	breast:
6	chr2:20223805..20226638-chr2:20247959..20250550,2	MCF-7	breast:
7	chr2:20225886..20230691-chr2:20231442..20234777,5	MCF-7	breast:
8	chr2:20225773..20228023-chr2:20269554..20271125,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000271991	Chromatin interaction
ENSG00000132031	Chromatin interaction
ENSG00000183891	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1016316	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11689320	0.91[EUR][1000 genomes]
rs11694170	0.88[EUR][1000 genomes]
rs11695154	0.89[EUR][1000 genomes]
rs1191805	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1191817	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1473890	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1513830	0.89[EUR][1000 genomes]
rs1513831	0.88[EUR][1000 genomes]
rs16987338	0.86[EUR][1000 genomes]
rs34539547	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs36071721	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3731673	0.91[EUR][1000 genomes]
rs3769759	0.91[EUR][1000 genomes]
rs3769760	0.91[EUR][1000 genomes]
rs3769762	0.90[EUR][1000 genomes]
rs62109431	0.91[EUR][1000 genomes]
rs6706375	0.91[EUR][1000 genomes]
rs6720508	0.88[EUR][1000 genomes]
rs7558988	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7570360	0.92[EUR][1000 genomes]
rs7587612	0.86[EUR][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20213000-20227200	Weak transcription	Ovary	ovary
2	chr2:20213200-20227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:20213200-20227000	Weak transcription	Aorta	Aorta
4	chr2:20213400-20227400	Weak transcription	Fetal Kidney	kidney
5	chr2:20213400-20232200	Weak transcription	Right Ventricle	heart
6	chr2:20213600-20227000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:20216400-20227800	Weak transcription	Fetal Intestine Large	intestine
8	chr2:20216400-20228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:20219400-20227000	Weak transcription	Left Ventricle	heart
10	chr2:20221200-20227000	Weak transcription	Liver	Liver
11	chr2:20221400-20227000	Weak transcription	A549	lung
12	chr2:20221400-20227200	Weak transcription	Fetal Lung	lung
13	chr2:20221400-20228200	Weak transcription	Fetal Stomach	stomach
14	chr2:20221400-20230000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:20221400-20230000	Weak transcription	Colonic Mucosa	Colon
16	chr2:20221400-20233200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr2:20221400-20249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:20221600-20227000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:20221600-20227000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:20221600-20227000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:20221600-20227200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:20221600-20228200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr2:20221800-20227000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr2:20222200-20227800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr2:20222200-20229800	Weak transcription	Brain Angular Gyrus	brain
26	chr2:20222400-20231200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr2:20222600-20227000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:20222600-20227000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:20222600-20230000	Weak transcription	Pancreas	Pancrea
30	chr2:20222800-20227000	Weak transcription	Primary T cells from cord blood	blood
31	chr2:20222800-20227000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:20222800-20227000	Weak transcription	HSMM	muscle
33	chr2:20222800-20228000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:20222800-20233200	Weak transcription	Right Atrium	heart
35	chr2:20223000-20227000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr2:20223000-20227000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr2:20223000-20227000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr2:20223000-20227000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr2:20223000-20229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr2:20223000-20230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr2:20223000-20233000	Weak transcription	NHEK	skin
42	chr2:20223200-20227000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:20223200-20227200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr2:20223800-20227200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr2:20223800-20232200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr2:20224000-20227000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr2:20224000-20227000	Weak transcription	Psoas Muscle	Psoas
48	chr2:20224200-20227000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:20224600-20226800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:20224600-20227000	Weak transcription	Fetal Brain Female	brain

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