Variant report

Variant	rs7587612
Chromosome Location	chr2:20267651-20267652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20258295..20259895-chr2:20267044..20269730,2	K562	blood:
2	chr2:20211794..20216252-chr2:20264729..20268156,5	MCF-7	breast:
3	chr2:20260254..20262852-chr2:20267314..20269443,2	K562	blood:

Variant related genes	Relation type
ENSG00000132031	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1016316	0.88[EUR][1000 genomes]
rs11689320	0.95[EUR][1000 genomes]
rs11694170	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11695154	0.93[EUR][1000 genomes]
rs1191805	0.80[EUR][1000 genomes]
rs1191817	0.81[EUR][1000 genomes]
rs13405657	0.81[AFR][1000 genomes]
rs1473890	0.88[EUR][1000 genomes]
rs1513830	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1513831	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16987338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28874059	0.81[AFR][1000 genomes]
rs34539547	0.93[EUR][1000 genomes]
rs36071721	0.87[EUR][1000 genomes]
rs3731673	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3769759	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3769760	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3769762	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62109431	0.92[EUR][1000 genomes]
rs6706375	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6720508	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7558777	0.86[EUR][1000 genomes]
rs7558988	0.84[EUR][1000 genomes]
rs7570360	0.92[EUR][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20264200-20268600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:20264200-20268600	Enhancers	HMEC	breast
3	chr2:20264200-20268600	Enhancers	NHEK	skin
4	chr2:20264400-20268600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:20264400-20268600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:20265400-20268600	Enhancers	HSMMtube	muscle
7	chr2:20265600-20268600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:20265600-20268600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:20265600-20268600	Enhancers	Adipose Nuclei	Adipose
10	chr2:20265600-20268600	Enhancers	Colon Smooth Muscle	Colon
11	chr2:20265800-20268600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:20266400-20268000	Enhancers	Hela-S3	cervix
13	chr2:20266400-20270000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:20266600-20267800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:20266600-20268200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:20266600-20268400	Weak transcription	K562	blood
17	chr2:20266600-20268600	Enhancers	HSMM	muscle
18	chr2:20266600-20270600	Weak transcription	Fetal Heart	heart
19	chr2:20266600-20270800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:20266600-20271000	Weak transcription	Brain Substantia Nigra	brain
21	chr2:20266600-20271200	Weak transcription	Brain Angular Gyrus	brain
22	chr2:20266600-20271200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:20266600-20271200	Weak transcription	Esophagus	oesophagus
24	chr2:20266600-20271200	Weak transcription	Gastric	stomach
25	chr2:20266600-20271200	Weak transcription	Left Ventricle	heart
26	chr2:20266600-20271200	Weak transcription	Right Atrium	heart
27	chr2:20266600-20271200	Weak transcription	Right Ventricle	heart
28	chr2:20266600-20271200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr2:20266600-20271200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr2:20266600-20271200	Weak transcription	Stomach Mucosa	stomach
31	chr2:20266600-20272400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr2:20266600-20273000	Weak transcription	Psoas Muscle	Psoas
33	chr2:20267000-20267800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:20267000-20267800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:20267200-20268400	Enhancers	Rectal Smooth Muscle	rectum
36	chr2:20267200-20268600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:20267200-20268600	Enhancers	NH-A	brain
38	chr2:20267200-20268600	Enhancers	Osteobl	bone
39	chr2:20267200-20268800	Enhancers	Fetal Stomach	stomach
40	chr2:20267200-20275000	Enhancers	Placenta	Placenta
41	chr2:20267400-20267800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:20267400-20268600	Enhancers	Placenta Amnion	Placenta Amnion
43	chr2:20267400-20271200	Weak transcription	Colonic Mucosa	Colon
44	chr2:20267600-20267800	Enhancers	Fetal Muscle Trunk	muscle
45	chr2:20267600-20268000	Weak transcription	NHDF-Ad	bronchial
46	chr2:20267600-20268200	Weak transcription	NHLF	lung
47	chr2:20267600-20268600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr2:20267600-20268600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:20267600-20268600	Enhancers	Fetal Kidney	kidney
50	chr2:20267600-20268600	Enhancers	Fetal Lung	lung

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