Variant report

Variant	rs1513831
Chromosome Location	chr2:20256856-20256857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20101275..20102885-chr2:20256168..20258061,2	K562	blood:
2	chr2:20255737..20257680-chr2:20258815..20261774,2	K562	blood:

Variant related genes	Relation type
ENSG00000183891	Chromatin interaction
ENSG00000271991	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1016316	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11674251	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap]
rs11679737	0.86[ASW][hapmap]
rs11689320	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11689431	1.00[ASW][hapmap];0.82[CEU][hapmap];0.84[JPT][hapmap]
rs11689490	0.81[CHD][hapmap]
rs11694170	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695154	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1191805	0.82[EUR][1000 genomes]
rs1191817	0.82[EUR][1000 genomes]
rs12988954	0.94[CEU][hapmap];0.92[JPT][hapmap]
rs1473890	0.89[EUR][1000 genomes]
rs1513830	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16987338	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34539547	1.00[CEU][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs36071721	0.89[EUR][1000 genomes]
rs3731673	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3769759	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3769760	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3769762	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62109431	0.93[EUR][1000 genomes]
rs6706375	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6709349	0.86[ASW][hapmap]
rs6720508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558777	0.88[EUR][1000 genomes]
rs7558988	0.85[EUR][1000 genomes]
rs7570360	0.94[EUR][1000 genomes]
rs7587612	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs878983	0.86[ASW][hapmap];0.83[CHD][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20252000-20261400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:20252400-20266000	Weak transcription	Pancreas	Pancrea
3	chr2:20253200-20264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links