Variant report

Variant	rs11919041
Chromosome Location	chr3:60763256-60763257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11709918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11923137	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12632664	1.00[JPT][hapmap]
rs13078149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13084713	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13094165	1.00[JPT][hapmap]
rs13096204	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17063973	1.00[ASN][1000 genomes]
rs17681785	0.85[JPT][hapmap]
rs1900669	1.00[JPT][hapmap]
rs2064011	1.00[ASN][1000 genomes]
rs2064013	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2205345	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6801955	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs735667	1.00[JPT][hapmap]
rs7611737	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7633027	1.00[ASN][1000 genomes]
rs7650786	1.00[JPT][hapmap]
rs9849413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Breast size	22747683	GWAS catalog

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60761800-60765400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60761800-60766200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:60762000-60765600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:60762800-60763400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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