Variant report

Variant	rs7650786
Chromosome Location	chr3:60780879-60780880
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11130785	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap]
rs11709918	1.00[JPT][hapmap]
rs11919041	1.00[JPT][hapmap]
rs11923137	0.88[CHD][hapmap];0.84[JPT][hapmap]
rs12632664	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13078149	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13094165	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs13096204	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1447920	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1447921	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1584337	1.00[CHB][hapmap]
rs17063973	1.00[CHD][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap]
rs17681785	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap]
rs1900669	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2064013	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2205345	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2205347	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2594155	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2736744	0.90[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6801955	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs6809918	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735667	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs7611737	0.82[JPT][hapmap]
rs7639167	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849413	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60778800-60787800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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