Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60761343..60763218-chr3:60765040..60767316,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11130785	0.95[CEU][hapmap]
rs11709918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11919041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11923137	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12632664	1.00[JPT][hapmap]
rs13078149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13084713	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13094165	1.00[JPT][hapmap]
rs13096204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063973	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17681785	0.90[CEU][hapmap];0.85[JPT][hapmap]
rs1900669	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs2064011	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6801955	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs735667	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs7611737	0.85[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7633027	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650786	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9849413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9854360	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60761800-60766200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:60765400-60766800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:60765600-60767000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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