Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60766983..60769190-chr3:60776208..60778636,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10866040	0.93[ASN][1000 genomes]
rs11130785	1.00[CHB][hapmap]
rs11709918	1.00[JPT][hapmap]
rs11919041	1.00[JPT][hapmap]
rs12630519	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13068446	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078149	1.00[JPT][hapmap]
rs13093744	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13094165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13096204	1.00[JPT][hapmap]
rs1447923	0.93[ASN][1000 genomes]
rs1584337	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17681785	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1900669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2064013	1.00[JPT][hapmap]
rs2205345	1.00[JPT][hapmap]
rs35100604	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7611737	0.85[JPT][hapmap]
rs7650786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9849413	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60776000-60778200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:60776200-60777600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:60776600-60778000	Enhancers	Fetal Heart	heart

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