Variant report

Variant	rs735667
Chromosome Location	chr3:60789574-60789575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60788618..60790358-chr3:60795094..60797575,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10866040	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130785	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11709918	1.00[JPT][hapmap]
rs11715778	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11715779	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11716669	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11919041	1.00[JPT][hapmap]
rs12630519	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12632664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13068446	0.96[ASN][1000 genomes]
rs13078149	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13093744	0.92[ASN][1000 genomes]
rs13094165	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13096204	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs1447923	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1584337	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17063973	0.90[CHD][hapmap]
rs17681785	0.91[ASW][hapmap];0.95[CEU][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.90[TSI][hapmap];0.94[YRI][hapmap]
rs1900669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2064013	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2205345	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs35100604	0.96[ASN][1000 genomes]
rs6782022	0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6782111	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6801955	0.88[CHD][hapmap]
rs7611737	0.82[JPT][hapmap]
rs7650786	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs9849413	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs735667	ASB14	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60788800-60790000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:60788800-60790000	Active TSS	Brain Angular Gyrus	brain
3	chr3:60788800-60790000	Active TSS	Brain Cingulate Gyrus	brain
4	chr3:60788800-60790200	Active TSS	Brain Anterior Caudate	brain
5	chr3:60788800-60790200	Active TSS	Brain Hippocampus Middle	brain
6	chr3:60788800-60790200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr3:60789000-60790200	Active TSS	Brain Substantia Nigra	brain
8	chr3:60789000-60790200	Bivalent Enhancer	Fetal Brain Male	brain
9	chr3:60789000-60790200	Active TSS	Fetal Brain Female	brain
10	chr3:60789200-60789600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr3:60789200-60789600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:60789200-60790000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:60789200-60790000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:60789200-60790000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:60789200-60790200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr3:60789200-60790200	Flanking Active TSS	Brain Germinal Matrix	brain

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