Variant report

Variant	rs11962725
Chromosome Location	chr6:100786566-100786567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11964322	1.00[AMR][1000 genomes]
rs55692601	1.00[AMR][1000 genomes]
rs56176715	1.00[AMR][1000 genomes]
rs56876848	1.00[AMR][1000 genomes]
rs57185278	1.00[EUR][1000 genomes]
rs57335321	1.00[AMR][1000 genomes]
rs59301700	1.00[AMR][1000 genomes]
rs60973981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760809	1.00[AMR][1000 genomes]
rs73760820	1.00[AMR][1000 genomes]
rs73760821	1.00[AMR][1000 genomes]
rs73760822	1.00[AMR][1000 genomes]
rs73760824	1.00[AMR][1000 genomes]
rs73760825	1.00[AMR][1000 genomes]
rs73760826	1.00[AMR][1000 genomes]
rs73760828	1.00[AMR][1000 genomes]
rs73760831	1.00[AMR][1000 genomes]
rs73760853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760866	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73760870	1.00[AMR][1000 genomes]
rs7749843	1.00[EUR][1000 genomes]
rs7771007	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100784200-100788000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100784400-100790600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:100785600-100790600	Weak transcription	NHDF-Ad	bronchial
4	chr6:100785600-100794000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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