Variant report

Variant	rs73760809
Chromosome Location	chr6:100625461-100625462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM13-9	chr6:100625085-100626068	NONHSAT114151

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11962725	1.00[AMR][1000 genomes]
rs11964322	1.00[AMR][1000 genomes]
rs55692601	1.00[AMR][1000 genomes]
rs56176715	1.00[AMR][1000 genomes]
rs56876848	1.00[AMR][1000 genomes]
rs57335321	1.00[AMR][1000 genomes]
rs59301700	1.00[AMR][1000 genomes]
rs60973981	1.00[AMR][1000 genomes]
rs73760820	1.00[AMR][1000 genomes]
rs73760821	1.00[AMR][1000 genomes]
rs73760822	1.00[AMR][1000 genomes]
rs73760824	1.00[AMR][1000 genomes]
rs73760825	1.00[AMR][1000 genomes]
rs73760826	1.00[AMR][1000 genomes]
rs73760828	1.00[AMR][1000 genomes]
rs73760831	1.00[AMR][1000 genomes]
rs73760853	1.00[AMR][1000 genomes]
rs73760862	1.00[AMR][1000 genomes]
rs73760864	1.00[AMR][1000 genomes]
rs73760865	1.00[AMR][1000 genomes]
rs73760866	1.00[AMR][1000 genomes]
rs73760870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752086	chr6:100257279-100675050	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032075	chr6:100277840-100633338	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1019210	chr6:100277840-100643681	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1023038	chr6:100277840-100650498	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv931862	chr6:100278999-100642841	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1020987	chr6:100286160-100639027	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv869769	chr6:100293855-100642782	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv948990	chr6:100303266-100636619	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv463985	chr6:100303266-100642867	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv604259	chr6:100303266-100642867	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv604260	chr6:100480795-100664839	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100615600-100631400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100620200-100644000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:100620600-100625600	Enhancers	Dnd41	blood
4	chr6:100623400-100626200	Enhancers	Adipose Nuclei	Adipose
5	chr6:100623400-100626200	Enhancers	Fetal Kidney	kidney
6	chr6:100623400-100626200	Enhancers	NH-A	brain
7	chr6:100623400-100626600	Enhancers	HSMM	muscle
8	chr6:100623600-100625600	Enhancers	Lung	lung
9	chr6:100623600-100626000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:100623600-100626000	Enhancers	Aorta	Aorta
11	chr6:100623600-100626200	Enhancers	NHLF	lung
12	chr6:100623600-100626800	Enhancers	HSMMtube	muscle
13	chr6:100623600-100627000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:100623600-100627000	Enhancers	NHDF-Ad	bronchial
15	chr6:100623800-100626000	Enhancers	Fetal Lung	lung
16	chr6:100623800-100627200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:100624400-100626000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:100624400-100626000	Enhancers	Hela-S3	cervix
19	chr6:100624400-100627000	Enhancers	Fetal Muscle Leg	muscle
20	chr6:100624600-100626200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:100624600-100630200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:100624800-100625800	Weak transcription	HMEC	breast
23	chr6:100624800-100626200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:100624800-100626200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:100624800-100626200	Enhancers	Osteobl	bone
26	chr6:100624800-100627000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:100624800-100631000	Weak transcription	K562	blood
28	chr6:100624800-100631200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:100625200-100625800	Weak transcription	Psoas Muscle	Psoas
30	chr6:100625200-100626000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:100625200-100626000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:100625200-100626200	Enhancers	Liver	Liver
33	chr6:100625200-100630400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:100625400-100626000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:100625400-100630200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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