Variant report

Variant	rs73760821
Chromosome Location	chr6:100685915-100685916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11962725	1.00[AMR][1000 genomes]
rs11964322	1.00[AMR][1000 genomes]
rs55692601	1.00[AMR][1000 genomes]
rs56176715	1.00[AMR][1000 genomes]
rs56876848	1.00[AMR][1000 genomes]
rs57335321	1.00[AMR][1000 genomes]
rs59301700	1.00[AMR][1000 genomes]
rs60973981	1.00[AMR][1000 genomes]
rs73760809	1.00[AMR][1000 genomes]
rs73760820	1.00[AMR][1000 genomes]
rs73760822	1.00[AMR][1000 genomes]
rs73760824	1.00[AMR][1000 genomes]
rs73760825	1.00[AMR][1000 genomes]
rs73760826	1.00[AMR][1000 genomes]
rs73760828	1.00[AMR][1000 genomes]
rs73760831	1.00[AMR][1000 genomes]
rs73760853	1.00[AMR][1000 genomes]
rs73760862	1.00[AMR][1000 genomes]
rs73760864	1.00[AMR][1000 genomes]
rs73760865	1.00[AMR][1000 genomes]
rs73760866	1.00[AMR][1000 genomes]
rs73760870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1001991	chr6:100674651-100685935	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1795039	chr6:100674799-100691977	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100677400-100686800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:100682400-100686000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:100682400-100686000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:100684000-100687000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:100684400-100686400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:100684600-100686200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:100684600-100686400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:100685000-100686000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:100685400-100695200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:100685600-100686000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:100685600-100686200	Enhancers	HSMM	muscle
12	chr6:100685800-100686000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:100685800-100686200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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