Variant report
| Variant | rs56176715 |
|---|---|
| Chromosome Location | chr6:100765660-100765661 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11962725 | 1.00[AMR][1000 genomes] |
| rs11964322 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55692601 | 1.00[AMR][1000 genomes] |
| rs56876848 | 1.00[AMR][1000 genomes] |
| rs57335321 | 1.00[AMR][1000 genomes] |
| rs59301700 | 1.00[AMR][1000 genomes] |
| rs60973981 | 1.00[AMR][1000 genomes] |
| rs73760809 | 1.00[AMR][1000 genomes] |
| rs73760820 | 1.00[AMR][1000 genomes] |
| rs73760821 | 1.00[AMR][1000 genomes] |
| rs73760822 | 1.00[AMR][1000 genomes] |
| rs73760824 | 1.00[AMR][1000 genomes] |
| rs73760825 | 1.00[AMR][1000 genomes] |
| rs73760826 | 1.00[AMR][1000 genomes] |
| rs73760828 | 1.00[AMR][1000 genomes] |
| rs73760831 | 1.00[AMR][1000 genomes] |
| rs73760853 | 1.00[AMR][1000 genomes] |
| rs73760862 | 1.00[AMR][1000 genomes] |
| rs73760864 | 1.00[AMR][1000 genomes] |
| rs73760865 | 1.00[AMR][1000 genomes] |
| rs73760866 | 1.00[AMR][1000 genomes] |
| rs73760870 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949535 | chr6:100740293-101469052 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:100760600-100766000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
