Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11962725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964322	1.00[AMR][1000 genomes]
rs55692601	1.00[AMR][1000 genomes]
rs56176715	1.00[AMR][1000 genomes]
rs56876848	1.00[AMR][1000 genomes]
rs57185278	1.00[EUR][1000 genomes]
rs57335321	1.00[AMR][1000 genomes]
rs59301700	1.00[AMR][1000 genomes]
rs60973981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760809	1.00[AMR][1000 genomes]
rs73760820	1.00[AMR][1000 genomes]
rs73760821	1.00[AMR][1000 genomes]
rs73760822	1.00[AMR][1000 genomes]
rs73760824	1.00[AMR][1000 genomes]
rs73760825	1.00[AMR][1000 genomes]
rs73760826	1.00[AMR][1000 genomes]
rs73760828	1.00[AMR][1000 genomes]
rs73760831	1.00[AMR][1000 genomes]
rs73760853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760862	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760865	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73760866	1.00[AMR][1000 genomes]
rs73760870	1.00[AMR][1000 genomes]
rs7749843	1.00[EUR][1000 genomes]
rs7771007	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100783400-100784200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr6:100783400-100784400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:100783400-100784400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:100783400-100785000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:100783400-100785600	Enhancers	NHDF-Ad	bronchial
6	chr6:100783600-100784000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:100783600-100784200	Enhancers	Osteobl	bone
8	chr6:100783600-100784400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:100783600-100784400	Enhancers	Muscle Satellite Cultured Cells	--

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