Variant report

Variant	rs11967877
Chromosome Location	chr6:139763473-139763474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17068659	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17068661	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6910781	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911457	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551317	0.89[ASN][1000 genomes]
rs73566007	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73566008	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73566025	1.00[ASN][1000 genomes]
rs73567918	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775520	0.89[ASN][1000 genomes]
rs757631	0.82[ASN][1000 genomes]
rs9484272	0.89[ASN][1000 genomes]
rs9495470	0.89[ASN][1000 genomes]
rs9495473	0.89[ASN][1000 genomes]
rs9495482	0.89[ASW][hapmap]
rs9495484	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654645	0.89[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139755400-139764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:139758200-139764200	Weak transcription	Fetal Kidney	kidney
3	chr6:139758400-139764600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:139760800-139768200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:139761000-139764800	Weak transcription	Fetal Stomach	stomach
6	chr6:139761000-139766000	Weak transcription	Fetal Lung	lung
7	chr6:139763000-139765600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:139763000-139767600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:139763200-139763600	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:139763200-139763800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:139763200-139763800	Enhancers	Fetal Thymus	thymus
12	chr6:139763200-139764000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr6:139763200-139764400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:139763200-139765200	Flanking Active TSS	K562	blood
15	chr6:139763200-139765400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:139763400-139763800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr6:139763400-139766200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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