Variant report

Variant	rs9495484
Chromosome Location	chr6:139771895-139771896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139765322..139769157-chr6:139769413..139772627,5	K562	blood:
3	chr6:139770584..139773183-chr6:139828829..139830952,2	K562	blood:
4	chr6:139769744..139772558-chr6:139778063..139781285,3	K562	blood:
5	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
6	chr6:139762168..139766688-chr6:139768523..139772512,5	K562	blood:
7	chr6:139694047..139695995-chr6:139771490..139773794,2	MCF-7	breast:
8	chr6:139771786..139774405-chr6:139971662..139973387,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11967877	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17068659	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17068661	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6910781	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911457	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551317	0.89[ASN][1000 genomes]
rs73566007	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73566008	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73566025	1.00[ASN][1000 genomes]
rs73567918	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775520	0.89[ASN][1000 genomes]
rs757631	0.82[ASN][1000 genomes]
rs9484272	0.89[ASN][1000 genomes]
rs9495470	0.89[ASN][1000 genomes]
rs9495473	0.89[ASN][1000 genomes]
rs9495482	0.89[ASW][hapmap]
rs9654645	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518835	chr6:139770067-139800892	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139765200-139772800	Weak transcription	HSMMtube	muscle
2	chr6:139768200-139774000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:139769000-139772000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:139769200-139773400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:139769400-139773200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:139769600-139773400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:139770600-139773400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:139770600-139773600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:139771200-139772200	Enhancers	Ovary	ovary
10	chr6:139771400-139772000	Enhancers	K562	blood
11	chr6:139771400-139772800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:139771400-139773000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:139771400-139773200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:139771400-139773200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:139771400-139773400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:139771400-139773400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:139771400-139773800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:139771600-139773400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:139771800-139773400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:139771800-139773600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:139771800-139774400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links