Variant report

Variant	rs17068659
Chromosome Location	chr6:139759808-139759809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11967877	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17068661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6911457	0.89[ASN][1000 genomes]
rs73551317	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73566007	0.89[ASN][1000 genomes]
rs73566008	0.89[ASN][1000 genomes]
rs73566025	0.89[ASN][1000 genomes]
rs73567918	0.89[ASN][1000 genomes]
rs73775520	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757631	0.92[ASN][1000 genomes]
rs9484272	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9495470	1.00[ASN][1000 genomes]
rs9495473	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9495484	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9654645	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139755000-139760000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:139755200-139760400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:139755400-139764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:139755600-139760600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:139755600-139763200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:139756000-139760400	Weak transcription	K562	blood
7	chr6:139757800-139760400	Weak transcription	Fetal Stomach	stomach
8	chr6:139758200-139760000	Enhancers	Fetal Heart	heart
9	chr6:139758200-139764200	Weak transcription	Fetal Kidney	kidney
10	chr6:139758400-139763400	Weak transcription	Placenta	Placenta
11	chr6:139758400-139764600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:139759600-139760400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:139759600-139761200	Enhancers	Colon Smooth Muscle	Colon
14	chr6:139759600-139761800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links