The 2.0 version of rSNPBase

Variant report

Variant rs12002407
Chromosome Location chr9:72696836-72696837
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:72694200-72697000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
2 chr9:72694600-72697600 Weak transcription H9 Cell Line embryonic stem cell
3 chr9:72694800-72697600 Weak transcription H1 Cell Line embryonic stem cell
4 chr9:72694800-72697800 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr9:72694800-72704400 Enhancers Rectal Smooth Muscle rectum
6 chr9:72694800-72708200 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr9:72694800-72721400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr9:72695000-72698000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr9:72695000-72700000 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr9:72695200-72698400 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr9:72695400-72697000 Enhancers Pancreas Pancrea
12 chr9:72695400-72698200 Enhancers Psoas Muscle Psoas
13 chr9:72695400-72709200 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr9:72695600-72701400 Enhancers Colon Smooth Muscle Colon
15 chr9:72695800-72697000 Enhancers Aorta Aorta
16 chr9:72696000-72697600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr9:72696000-72698000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr9:72696200-72698600 Enhancers NH-A brain
19 chr9:72696400-72697200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr9:72696400-72697600 Weak transcription Stomach Smooth Muscle stomach
21 chr9:72696400-72698000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr9:72696400-72698000 Weak transcription NHEK skin
23 chr9:72696400-72698200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr9:72696400-72698200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr9:72696400-72698200 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr9:72696400-72699000 Weak transcription Ovary ovary
27 chr9:72696400-72701800 Weak transcription Right Ventricle heart
28 chr9:72696400-72706200 Weak transcription Left Ventricle heart
29 chr9:72696400-72706600 Weak transcription Fetal Brain Female brain
30 chr9:72696400-72708800 Weak transcription Fetal Muscle Leg muscle
31 chr9:72696600-72697000 Enhancers HSMMtube muscle
32 chr9:72696600-72697600 Weak transcription HMEC breast
33 chr9:72696600-72698400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr9:72696600-72701400 Weak transcription Fetal Stomach stomach
35 chr9:72696800-72698400 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr9:72696800-72700200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr9:72696800-72700400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr9:72696800-72701400 Weak transcription Adipose Nuclei Adipose
39 chr9:72696800-72705800 Weak transcription HSMM muscle

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Last update: Aug 31, 2015