Variant report

Variant	rs58660710
Chromosome Location	chr9:72668213-72668214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10511979	0.87[ASN][1000 genomes]
rs1112232	0.91[ASN][1000 genomes]
rs12002407	0.91[ASN][1000 genomes]
rs12003971	0.90[ASN][1000 genomes]
rs12685632	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12685937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685939	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12686383	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12686668	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17087686	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17523363	1.00[ASN][1000 genomes]
rs1927105	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1927110	0.89[ASN][1000 genomes]
rs1986412	0.91[ASN][1000 genomes]
rs2001235	0.93[ASN][1000 genomes]
rs2296772	0.84[ASN][1000 genomes]
rs2296773	0.84[ASN][1000 genomes]
rs2309584	0.91[ASN][1000 genomes]
rs2975866	0.90[ASN][1000 genomes]
rs2975867	0.90[ASN][1000 genomes]
rs2975868	0.90[ASN][1000 genomes]
rs2975880	0.89[ASN][1000 genomes]
rs2975884	0.89[ASN][1000 genomes]
rs2975911	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2997668	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2997679	0.91[ASN][1000 genomes]
rs2997681	0.86[ASN][1000 genomes]
rs2997714	0.89[ASN][1000 genomes]
rs3015165	0.96[ASN][1000 genomes]
rs3015169	0.92[ASN][1000 genomes]
rs3015170	0.92[ASN][1000 genomes]
rs3015171	0.90[ASN][1000 genomes]
rs3015173	0.92[ASN][1000 genomes]
rs3015174	0.92[ASN][1000 genomes]
rs3015175	0.93[ASN][1000 genomes]
rs3015177	0.91[ASN][1000 genomes]
rs3015180	0.91[ASN][1000 genomes]
rs3015181	0.91[ASN][1000 genomes]
rs3015182	0.91[ASN][1000 genomes]
rs3015184	0.90[ASN][1000 genomes]
rs3015185	0.90[ASN][1000 genomes]
rs3015186	0.90[ASN][1000 genomes]
rs3015189	0.90[ASN][1000 genomes]
rs3015198	0.89[ASN][1000 genomes]
rs3015204	0.89[ASN][1000 genomes]
rs3015207	0.89[ASN][1000 genomes]
rs3015213	0.89[ASN][1000 genomes]
rs3015223	0.86[ASN][1000 genomes]
rs3829096	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4289878	0.90[ASN][1000 genomes]
rs4460447	0.89[ASN][1000 genomes]
rs4495496	0.84[ASN][1000 genomes]
rs58085049	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61416419	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72709197	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709200	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72710469	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72710483	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs745852	0.89[ASN][1000 genomes]
rs867595	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72660000-72668400	Weak transcription	HUVEC	blood vessel
2	chr9:72660200-72668400	Weak transcription	Gastric	stomach
3	chr9:72661600-72671600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:72661600-72672000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:72661800-72671600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:72664400-72668400	Weak transcription	Spleen	Spleen
7	chr9:72664800-72668400	Weak transcription	Esophagus	oesophagus
8	chr9:72664800-72668600	Weak transcription	Brain Germinal Matrix	brain
9	chr9:72664800-72668600	Weak transcription	NH-A	brain
10	chr9:72664800-72670400	Weak transcription	Left Ventricle	heart
11	chr9:72664800-72670400	Weak transcription	Right Ventricle	heart
12	chr9:72665000-72668400	Weak transcription	NHDF-Ad	bronchial
13	chr9:72665000-72669800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:72665000-72670200	Weak transcription	Lung	lung
15	chr9:72665200-72668400	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:72665200-72668800	Weak transcription	Osteobl	bone
17	chr9:72665200-72670200	Weak transcription	Fetal Stomach	stomach
18	chr9:72665200-72673600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:72665400-72669600	Weak transcription	Fetal Lung	lung
20	chr9:72665400-72673200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:72666800-72670600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:72667000-72668800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:72667000-72669200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr9:72667000-72669400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:72667000-72669400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:72667000-72670200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:72667000-72670600	Enhancers	HMEC	breast
28	chr9:72667200-72668400	Weak transcription	Adipose Nuclei	Adipose
29	chr9:72667200-72668600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:72667200-72668600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr9:72667200-72668600	Enhancers	Liver	Liver
32	chr9:72667200-72669800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:72667200-72670000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:72667200-72670400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:72667400-72668600	Enhancers	Psoas Muscle	Psoas
36	chr9:72667400-72668800	Enhancers	Ovary	ovary
37	chr9:72667400-72669200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:72667400-72670600	Genic enhancers	HSMM	muscle
39	chr9:72667600-72669000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:72667600-72670600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:72667800-72668800	Enhancers	Aorta	Aorta
43	chr9:72667800-72668800	Enhancers	Right Atrium	heart
44	chr9:72667800-72669000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr9:72667800-72669200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr9:72667800-72670000	Enhancers	HSMMtube	muscle
47	chr9:72667800-72670400	Enhancers	NHEK	skin
48	chr9:72667800-72670600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr9:72668000-72669600	Enhancers	Colon Smooth Muscle	Colon
50	chr9:72668200-72668400	Enhancers	Rectal Smooth Muscle	rectum

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