Variant report

Variant	rs17523363
Chromosome Location	chr9:72672497-72672498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10511979	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1073540	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1112232	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12002407	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12003971	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12685632	1.00[ASN][1000 genomes]
rs12685937	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12685939	1.00[ASN][1000 genomes]
rs12686383	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12686668	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17087686	0.97[ASN][1000 genomes]
rs1927105	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927110	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927148	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs1927150	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1986412	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2001235	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296772	0.84[ASN][1000 genomes]
rs2296773	0.84[ASN][1000 genomes]
rs2309584	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2975866	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2975867	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2975868	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2975880	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2975884	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2975911	1.00[ASN][1000 genomes]
rs2997668	0.98[ASN][1000 genomes]
rs2997679	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2997681	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2997714	0.89[ASN][1000 genomes]
rs3015165	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3015169	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3015170	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3015171	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3015173	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3015174	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3015175	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015177	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3015180	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3015181	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3015182	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3015184	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3015185	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3015186	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3015189	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3015198	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3015204	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3015207	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3015213	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3015223	0.86[ASN][1000 genomes]
rs3829096	0.88[ASN][1000 genomes]
rs4289878	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4460447	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4495496	0.84[ASN][1000 genomes]
rs58085049	0.93[ASN][1000 genomes]
rs58660710	1.00[ASN][1000 genomes]
rs61416419	0.92[ASN][1000 genomes]
rs7034322	0.92[CHB][hapmap]
rs716535	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs72709197	1.00[ASN][1000 genomes]
rs72709200	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72710469	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72710483	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs745852	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs867595	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943540	0.92[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72665200-72673600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:72665400-72673200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:72668800-72675800	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:72668800-72676600	Weak transcription	Gastric	stomach
6	chr9:72668800-72681400	Weak transcription	Esophagus	oesophagus
7	chr9:72669200-72675000	Weak transcription	NHDF-Ad	bronchial
8	chr9:72669200-72682600	Weak transcription	Osteobl	bone
9	chr9:72670000-72675000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:72670000-72688400	Weak transcription	NH-A	brain
11	chr9:72670200-72675000	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr9:72670200-72675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:72670400-72674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:72670600-72673400	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:72670600-72673400	Weak transcription	Right Atrium	heart
16	chr9:72670600-72673400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:72670600-72674600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:72670600-72674600	Weak transcription	Psoas Muscle	Psoas
19	chr9:72670600-72676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:72671000-72673400	Weak transcription	Adipose Nuclei	Adipose
21	chr9:72671000-72673400	Weak transcription	Fetal Lung	lung
22	chr9:72671000-72675600	Enhancers	Stomach Smooth Muscle	stomach
23	chr9:72671200-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:72671400-72672600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:72671600-72673400	Weak transcription	Fetal Stomach	stomach
26	chr9:72671600-72675600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr9:72672000-72674600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:72672000-72675600	Weak transcription	HSMM	muscle
29	chr9:72672000-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:72672200-72675200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:72672400-72673000	Genic enhancers	Colon Smooth Muscle	Colon
32	chr9:72672400-72674000	Weak transcription	Small Intestine	intestine
33	chr9:72672400-72674000	Weak transcription	HSMMtube	muscle
34	chr9:72672400-72674400	Weak transcription	HMEC	breast
35	chr9:72672400-72674600	Weak transcription	NHEK	skin
36	chr9:72672400-72675800	Weak transcription	Spleen	Spleen
37	chr9:72672400-72680200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:72672400-72681400	Weak transcription	Ovary	ovary

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