Variant report

Variant	rs3015198
Chromosome Location	chr9:72717846-72717847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10114215	0.84[ASN][1000 genomes]
rs10511979	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1073540	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1112232	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1180102	0.92[CHB][hapmap]
rs1180104	0.92[CHB][hapmap]
rs1180105	0.92[CHB][hapmap]
rs1180117	0.92[CHB][hapmap]
rs12002407	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12003971	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12006212	0.92[CHB][hapmap]
rs12683706	0.86[ASN][1000 genomes]
rs12683986	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12684987	0.86[ASN][1000 genomes]
rs12685632	0.89[ASN][1000 genomes]
rs12685937	0.87[ASN][1000 genomes]
rs12685939	0.89[ASN][1000 genomes]
rs12686383	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12686573	0.82[ASN][1000 genomes]
rs12686668	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12686850	0.84[ASN][1000 genomes]
rs17052443	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs17087686	0.90[ASN][1000 genomes]
rs17088796	0.86[ASN][1000 genomes]
rs17088840	0.86[ASN][1000 genomes]
rs17088889	0.86[ASN][1000 genomes]
rs17088905	0.84[ASN][1000 genomes]
rs17523363	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927105	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927110	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927116	0.86[ASN][1000 genomes]
rs1927117	0.84[ASN][1000 genomes]
rs1927119	0.84[ASN][1000 genomes]
rs1927148	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs1927150	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1986412	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2001235	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148865	0.84[ASN][1000 genomes]
rs2296772	0.95[ASN][1000 genomes]
rs2296773	0.95[ASN][1000 genomes]
rs2309584	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2871290	0.86[ASN][1000 genomes]
rs2975866	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2975867	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2975868	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2975869	0.92[AFR][1000 genomes]
rs2975870	0.92[AFR][1000 genomes]
rs2975871	0.92[AFR][1000 genomes]
rs2975872	0.90[AFR][1000 genomes]
rs2975873	0.92[AFR][1000 genomes]
rs2975874	0.92[AFR][1000 genomes]
rs2975875	0.90[AFR][1000 genomes]
rs2975876	0.92[AFR][1000 genomes]
rs2975878	0.92[AFR][1000 genomes]
rs2975880	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2975881	0.92[AFR][1000 genomes]
rs2975882	0.92[AFR][1000 genomes]
rs2975883	0.92[AFR][1000 genomes]
rs2975884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2975885	0.92[AFR][1000 genomes]
rs2975886	0.92[AFR][1000 genomes]
rs2975887	0.92[AFR][1000 genomes]
rs2975911	0.89[ASN][1000 genomes]
rs2997668	0.91[ASN][1000 genomes]
rs2997679	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2997681	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2997683	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs2997688	0.90[AFR][1000 genomes]
rs2997689	0.90[AFR][1000 genomes]
rs2997691	0.92[AFR][1000 genomes]
rs2997692	0.92[AFR][1000 genomes]
rs2997694	0.92[AFR][1000 genomes]
rs2997695	0.92[AFR][1000 genomes]
rs2997697	0.81[AFR][1000 genomes]
rs2997698	0.92[AFR][1000 genomes]
rs2997699	0.92[AFR][1000 genomes]
rs2997700	0.92[AFR][1000 genomes]
rs2997701	0.92[AFR][1000 genomes]
rs2997702	0.92[AFR][1000 genomes]
rs2997703	0.89[AFR][1000 genomes]
rs2997704	0.92[AFR][1000 genomes]
rs2997705	0.92[AFR][1000 genomes]
rs2997706	0.92[AFR][1000 genomes]
rs2997714	1.00[ASN][1000 genomes]
rs3015165	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3015169	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3015170	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3015171	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3015173	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3015174	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3015175	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3015177	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3015180	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3015181	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3015182	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3015184	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3015185	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3015186	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3015189	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3015190	0.91[AFR][1000 genomes]
rs3015191	0.92[AFR][1000 genomes]
rs3015193	0.92[AFR][1000 genomes]
rs3015194	0.92[AFR][1000 genomes]
rs3015195	0.92[AFR][1000 genomes]
rs3015196	0.92[AFR][1000 genomes]
rs3015197	0.92[AFR][1000 genomes]
rs3015199	0.92[AFR][1000 genomes]
rs3015201	0.92[AFR][1000 genomes]
rs3015202	0.92[AFR][1000 genomes]
rs3015203	0.84[AFR][1000 genomes]
rs3015204	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015205	0.92[AFR][1000 genomes]
rs3015206	0.92[AFR][1000 genomes]
rs3015207	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015208	0.92[AFR][1000 genomes]
rs3015209	0.92[AFR][1000 genomes]
rs3015210	0.92[AFR][1000 genomes]
rs3015212	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3015213	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015214	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3015215	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3015223	0.97[ASN][1000 genomes]
rs35188046	0.86[ASN][1000 genomes]
rs3829096	0.88[ASN][1000 genomes]
rs4289878	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4449855	0.92[CHB][hapmap]
rs4460447	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495496	0.95[ASN][1000 genomes]
rs4744982	0.86[ASN][1000 genomes]
rs56735283	0.82[ASN][1000 genomes]
rs57048128	0.82[ASN][1000 genomes]
rs58085049	0.96[ASN][1000 genomes]
rs58660710	0.89[ASN][1000 genomes]
rs58969772	0.84[ASN][1000 genomes]
rs59189596	0.86[ASN][1000 genomes]
rs59589460	0.86[ASN][1000 genomes]
rs59619263	0.86[ASN][1000 genomes]
rs61265226	0.84[ASN][1000 genomes]
rs61416419	0.92[ASN][1000 genomes]
rs7022893	0.84[ASN][1000 genomes]
rs7034322	0.92[CHB][hapmap]
rs716535	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs72709197	0.89[ASN][1000 genomes]
rs72709200	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72710469	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72710483	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs745852	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867595	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs943536	0.92[CHB][hapmap]
rs943540	0.92[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949052	chr9:72698039-72741247	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv982638	chr9:72715341-72722036	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72694800-72721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:72707400-72726800	Weak transcription	Pancreas	Pancrea
3	chr9:72709200-72721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:72709400-72722600	Weak transcription	HSMM	muscle
5	chr9:72710200-72719000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:72712400-72718000	Enhancers	Colon Smooth Muscle	Colon
7	chr9:72713200-72723200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:72713800-72725600	Weak transcription	Stomach Mucosa	stomach
9	chr9:72713800-72728200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:72714800-72742400	Weak transcription	Aorta	Aorta
11	chr9:72715400-72721400	Weak transcription	Fetal Stomach	stomach
12	chr9:72715600-72723200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:72715600-72723200	Weak transcription	Ovary	ovary
14	chr9:72715600-72725200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:72715600-72725400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:72715600-72725400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:72715600-72725600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:72715800-72719600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:72715800-72721000	Weak transcription	HSMMtube	muscle
20	chr9:72715800-72724000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:72715800-72725400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:72716000-72725000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:72716200-72723200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:72716600-72720000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:72716800-72721000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:72717200-72718000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr9:72717600-72718000	Enhancers	Rectal Smooth Muscle	rectum

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