Variant report

Variant	rs1202110
Chromosome Location	chr6:73271817-73271818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73271217..73271941-chr8:79148736..79149236,2	K562	blood:
2	chr6:73270540..73272055-chr6:73334737..73337247,2	K562	blood:
3	chr6:73270229..73272908-chr6:73274722..73276357,2	MCF-7	breast:
4	chr6:73270287..73274048-chr6:73274112..73277683,5	K562	blood:
5	chr6:73152078..73154373-chr6:73270636..73272523,2	K562	blood:
6	chr6:73271338..73274048-chr6:73274112..73275955,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10085254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485210	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10485211	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147536	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147538	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147540	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202107	1.00[CEU][hapmap]
rs1202117	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1202118	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202120	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202121	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202122	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334345	0.85[EUR][1000 genomes]
rs1590801	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882468	0.88[EUR][1000 genomes]
rs16882473	0.92[EUR][1000 genomes]
rs16882476	0.90[EUR][1000 genomes]
rs16882487	1.00[CEU][hapmap]
rs16882500	1.00[CEU][hapmap]
rs16882506	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16882539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307137	0.92[EUR][1000 genomes]
rs55739455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59106883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59352656	0.92[EUR][1000 genomes]
rs61032405	0.92[EUR][1000 genomes]
rs66805874	0.83[EUR][1000 genomes]
rs68186765	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6909267	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939319	0.88[EUR][1000 genomes]
rs72941783	0.85[EUR][1000 genomes]
rs72941788	0.85[EUR][1000 genomes]
rs72943183	0.92[EUR][1000 genomes]
rs72946182	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72946193	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72948113	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9442816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446697	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9446701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446703	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446704	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446705	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73270600-73272000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:73270600-73272000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:73270600-73272000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:73270800-73272000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:73271200-73272000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:73271800-73272000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:73271800-73272000	Enhancers	K562	blood

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