Variant report

Variant	rs6909267
Chromosome Location	chr6:73263697-73263698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73256563..73258779-chr6:73261159..73263806,2	K562	blood:
2	chr6:73127401..73129885-chr6:73262946..73264619,2	K562	blood:
3	chr6:73239217..73240861-chr6:73262225..73264019,2	K562	blood:
4	chr6:73185336..73188138-chr6:73263615..73266240,2	K562	blood:
5	chr6:73262215..73264630-chr6:73332275..73334908,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10085254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485210	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10485211	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147536	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147538	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147540	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202107	1.00[CEU][hapmap]
rs1202110	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202117	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1202118	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202120	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202121	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202122	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334345	0.85[EUR][1000 genomes]
rs1590801	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882468	0.88[EUR][1000 genomes]
rs16882473	0.92[EUR][1000 genomes]
rs16882476	0.90[EUR][1000 genomes]
rs16882487	1.00[CEU][hapmap]
rs16882500	1.00[CEU][hapmap]
rs16882506	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16882539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307137	0.92[EUR][1000 genomes]
rs55739455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59106883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59352656	0.92[EUR][1000 genomes]
rs61032405	0.92[EUR][1000 genomes]
rs66805874	0.83[EUR][1000 genomes]
rs68186765	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72939319	0.88[EUR][1000 genomes]
rs72941783	0.85[EUR][1000 genomes]
rs72941788	0.85[EUR][1000 genomes]
rs72943183	0.92[EUR][1000 genomes]
rs72946182	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72946193	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72948113	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9442816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442819	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446697	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9446701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446704	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446705	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73257000-73264800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:73261000-73265200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:73261000-73266000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:73261200-73265800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:73262200-73266000	Enhancers	HSMM	muscle
6	chr6:73262200-73266200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73262400-73264600	Weak transcription	Pancreas	Pancrea
8	chr6:73262400-73265800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:73262600-73263800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:73262600-73263800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:73262600-73263800	Flanking Active TSS	K562	blood
12	chr6:73262600-73264800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:73262600-73265000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:73262600-73265200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:73262600-73265200	Enhancers	NHDF-Ad	bronchial
16	chr6:73262600-73265800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:73262600-73266000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:73262600-73266600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:73262800-73263800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:73262800-73264200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:73263000-73263800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:73263000-73264000	Active TSS	A549	lung
23	chr6:73263000-73264600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:73263000-73264800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:73263000-73265000	Flanking Active TSS	NH-A	brain
26	chr6:73263400-73263800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:73263400-73263800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:73263400-73263800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:73263400-73263800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:73263400-73263800	Enhancers	Colon Smooth Muscle	Colon
31	chr6:73263400-73264000	Flanking Active TSS	HMEC	breast
32	chr6:73263400-73264000	Flanking Active TSS	HSMMtube	muscle
33	chr6:73263400-73264000	Flanking Active TSS	Osteobl	bone
34	chr6:73263400-73264200	Enhancers	Fetal Brain Female	brain
35	chr6:73263400-73264600	Flanking Active TSS	NHEK	skin
36	chr6:73263400-73265400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:73263600-73263800	Flanking Active TSS	NHLF	lung
38	chr6:73263600-73264000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:73263600-73264000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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