Variant report

Variant	rs16882539
Chromosome Location	chr6:73243186-73243187
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73241866..73243556-chr6:73257472..73259393,2	K562	blood:
2	chr6:73240421..73243300-chr6:73244764..73247012,2	K562	blood:
3	chr6:73242981..73244907-chr6:73253743..73256679,2	MCF-7	breast:
4	chr6:73235202..73238182-chr6:73242256..73244543,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10085254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485210	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10485211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147536	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147538	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202107	1.00[CEU][hapmap]
rs1202110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202117	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1202118	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202120	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202121	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202122	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334345	0.85[EUR][1000 genomes]
rs1590801	1.00[CEU][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882468	0.88[EUR][1000 genomes]
rs16882473	0.92[EUR][1000 genomes]
rs16882476	0.90[EUR][1000 genomes]
rs16882487	1.00[CEU][hapmap]
rs16882500	1.00[CEU][hapmap]
rs16882506	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4307137	0.92[EUR][1000 genomes]
rs55739455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59106883	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59352656	0.92[EUR][1000 genomes]
rs61032405	0.92[EUR][1000 genomes]
rs66805874	0.83[EUR][1000 genomes]
rs68186765	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6909267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939319	0.88[EUR][1000 genomes]
rs72941783	0.85[EUR][1000 genomes]
rs72941788	0.85[EUR][1000 genomes]
rs72943183	0.92[EUR][1000 genomes]
rs72946182	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72946193	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72948113	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9442816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442819	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446697	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9446701	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446705	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73240600-73250600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73241400-73243400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:73241800-73244200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:73242200-73244400	Enhancers	Osteobl	bone
5	chr6:73242200-73244600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:73242400-73243600	Enhancers	HSMM	muscle
7	chr6:73242600-73243600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:73242800-73243400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:73242800-73243400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:73242800-73243400	Enhancers	HSMMtube	muscle
11	chr6:73243000-73243400	Enhancers	NH-A	brain
12	chr6:73243000-73243600	Enhancers	A549	lung
13	chr6:73243000-73244200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:73243000-73245200	Enhancers	K562	blood

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