Variant report

Variant	rs72941788
Chromosome Location	chr6:73176143-73176144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10085254	0.85[EUR][1000 genomes]
rs10485210	0.92[EUR][1000 genomes]
rs10485211	0.88[EUR][1000 genomes]
rs1147534	0.85[EUR][1000 genomes]
rs1147536	0.88[EUR][1000 genomes]
rs1147537	0.85[EUR][1000 genomes]
rs1147538	0.83[EUR][1000 genomes]
rs1147540	0.85[EUR][1000 genomes]
rs1202110	0.85[EUR][1000 genomes]
rs1202117	0.88[EUR][1000 genomes]
rs1202118	0.83[EUR][1000 genomes]
rs1202120	0.83[EUR][1000 genomes]
rs1202121	0.81[EUR][1000 genomes]
rs1202122	0.83[EUR][1000 genomes]
rs1334345	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590801	0.85[EUR][1000 genomes]
rs16882468	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16882473	0.92[EUR][1000 genomes]
rs16882476	0.90[EUR][1000 genomes]
rs16882506	0.92[EUR][1000 genomes]
rs16882539	0.85[EUR][1000 genomes]
rs4307137	0.92[EUR][1000 genomes]
rs55739455	0.85[EUR][1000 genomes]
rs59106883	0.85[EUR][1000 genomes]
rs59352656	0.92[EUR][1000 genomes]
rs61032405	0.92[EUR][1000 genomes]
rs66805874	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68186765	0.92[EUR][1000 genomes]
rs6909267	0.85[EUR][1000 genomes]
rs72939319	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72941783	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943183	0.92[EUR][1000 genomes]
rs72946182	0.88[EUR][1000 genomes]
rs72946193	0.88[EUR][1000 genomes]
rs72948113	0.88[EUR][1000 genomes]
rs9442816	0.85[EUR][1000 genomes]
rs9442819	0.85[EUR][1000 genomes]
rs9446697	0.88[EUR][1000 genomes]
rs9446701	0.85[EUR][1000 genomes]
rs9446703	0.85[EUR][1000 genomes]
rs9446704	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73174600-73177200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:73175400-73176600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:73175400-73179200	Weak transcription	Pancreas	Pancrea
4	chr6:73176000-73176400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73176000-73176400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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