Variant report

Variant	rs1202121
Chromosome Location	chr6:73268352-73268353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10085254	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485210	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10485211	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1147534	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147536	0.92[EUR][1000 genomes]
rs1147537	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147538	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147540	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202107	1.00[CEU][hapmap]
rs1202110	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202117	0.92[EUR][1000 genomes]
rs1202118	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202120	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202122	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334345	0.81[EUR][1000 genomes]
rs1590801	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882468	0.84[EUR][1000 genomes]
rs16882473	0.88[EUR][1000 genomes]
rs16882476	0.86[EUR][1000 genomes]
rs16882487	1.00[CEU][hapmap]
rs16882500	1.00[CEU][hapmap]
rs16882506	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16882539	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307137	0.88[EUR][1000 genomes]
rs55739455	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59106883	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59352656	0.88[EUR][1000 genomes]
rs61032405	0.88[EUR][1000 genomes]
rs68186765	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6909267	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939319	0.84[EUR][1000 genomes]
rs72941783	0.81[EUR][1000 genomes]
rs72941788	0.81[EUR][1000 genomes]
rs72943183	0.88[EUR][1000 genomes]
rs72946182	0.92[EUR][1000 genomes]
rs72946193	0.92[EUR][1000 genomes]
rs72948113	0.92[EUR][1000 genomes]
rs9442816	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442819	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446697	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9446701	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446703	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446704	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446705	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73263800-73271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:73265000-73270400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:73265000-73270600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:73265200-73268400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:73265200-73269000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:73265200-73270400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:73265600-73269000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:73265600-73270600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:73265600-73270800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:73265800-73268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:73265800-73268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:73265800-73269000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:73266000-73268400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:73266200-73270600	Weak transcription	Osteobl	bone
15	chr6:73266400-73269400	Weak transcription	NHEK	skin
16	chr6:73266600-73270000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:73266600-73270000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:73268200-73268400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:73268200-73268800	Flanking Active TSS	K562	blood
20	chr6:73268200-73269400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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